PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10038161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HB-other | ||||||||
Protein Properties | Length: 221aa MW: 24121.4 Da PI: 4.3143 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.5 | 1.7e-06 | 58 | 95 | 3 | 40 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS- CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLt 40 k ++tkeq++eLe++F ++ y ++++ ++klgL+ Lus10038161 58 KCYRHTKEQIKELESFFDECAYSDEKRLNVFSRKLGLE 95 55679*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-8 | 37 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.38E-6 | 40 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.17E-4 | 56 | 94 | No hit | No description |
SuperFamily | SSF55961 | 1.12E-5 | 83 | 209 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEKTCELNIP TDADAQQVDV VVVNLVERLD VKPELGSNMN QLGGSSHDEM QQHTSKRKCY 60 RHTKEQIKEL ESFFDECAYS DEKRLNVFSR KLGLEIMQQY GGSPGPVLIL QEIWNDESSS 120 LMVYAPVDMR SMQMVMNGGD TTYVALLPSG LAIVPDNNSG VGSGDANGIG SSGGCIMTVG 180 FQILVSSEVT RTSVEIMDQA VSCTIQRIKD IFQILMVDSA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10038161 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10038161 | 1e-162 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52170.1 | 9e-28 | homeodomain GLABROUS 7 |
Link Out ? help Back to Top | |
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Phytozome | Lus10038161 |