PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038161
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 221aa    MW: 24121.4 Da    PI: 4.3143
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038161genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.51.7e-065895340
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS- CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLt 40
                 k  ++tkeq++eLe++F ++ y ++++    ++klgL+
  Lus10038161 58 KCYRHTKEQIKELESFFDECAYSDEKRLNVFSRKLGLE 95
                 55679*******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-83798IPR009057Homeodomain-like
SuperFamilySSF466894.38E-64097IPR009057Homeodomain-like
CDDcd000862.17E-45694No hitNo description
SuperFamilySSF559611.12E-583209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEKTCELNIP TDADAQQVDV VVVNLVERLD VKPELGSNMN QLGGSSHDEM QQHTSKRKCY  60
RHTKEQIKEL ESFFDECAYS DEKRLNVFSR KLGLEIMQQY GGSPGPVLIL QEIWNDESSS  120
LMVYAPVDMR SMQMVMNGGD TTYVALLPSG LAIVPDNNSG VGSGDANGIG SSGGCIMTVG  180
FQILVSSEVT RTSVEIMDQA VSCTIQRIKD IFQILMVDSA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100381611e-162(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.19e-28homeodomain GLABROUS 7