PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038135
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ZF-HD
Protein Properties Length: 334aa    MW: 37594.8 Da    PI: 8.5591
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038135genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.81.9e-31103157358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                   +rY+eClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR++++
  Lus10038135 103 VIRYRECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKQTV 157
                  689*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-23104156IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.4E-29104156IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.6E-31105155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.418106155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS000280142166IPR007087Zinc finger, C2H2
SuperFamilySSF466894.72E-19231304IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-29233305IPR009057Homeodomain-like
TIGRFAMsTIGR015657.3E-26244300IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MELTSHHHHH HHHVHEEEED HMPIPVNASG GLNHLIHHHH NPPLSPSTVT VTPPTCSSAP  60
LSVSLPNNNN NNNGSGGSLV VVVDRHQHHN NNNKNNSKRR SSVIRYRECL KNHAAAMGGN  120
ATDGCGEFMP SGEEGTIEAL TCSACNCHRN FHRKQTVLHH PPHPNHHHKP LQLLQPPHHQ  180
VPPPLVVPHH HHHMLMSYNM AAAAAAGSLL PSESDNHNND AFNKEDHHHH HEYHNNKQQQ  240
GTNKKRHRTK FSQEQKEKML AFAESVGWKL QKQEESVVQQ FCQEIGVKRR VLKVWMHNNK  300
HTYQHHHHQN AVVSRPPVLH PSTTTTAPLP ASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-222443021775ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038135
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017979046.12e-75PREDICTED: zinc-finger homeodomain protein 4
TrEMBLA0A061GFH04e-74A0A061GFH0_THECC; Homeobox protein 31
STRINGLus100381350.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-40homeobox protein 24