PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038028
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 444aa    MW: 48427.6 Da    PI: 8.2398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038028genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.4e-31202260259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+rsaed++++++tYeg+H+h+
  Lus10038028 202 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvACPVRKQVQRSAEDKSILITTYEGNHKHP 260
                  7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-32186262IPR003657WRKY domain
SuperFamilySSF1182901.44E-26195262IPR003657WRKY domain
PROSITE profilePS5081128.07196262IPR003657WRKY domain
SMARTSM007742.8E-35201261IPR003657WRKY domain
PfamPF031063.0E-26203260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNSLNDDHED CREMNHDGGT RSRSSPINTG LNLLLATSSP HNDSNDEVKV LKVEVERMKE  60
ENKRLKGMVD HILQSYKHLQ SHLMIMAINN KRPGEQSTPT VPPSYNEFMD PQLLTPPAVV  120
ALPPPNEKTA KYDRTPMEED YIINSHGDQA SQSWVDGSPH KIPKLEPPPP RRRVDDDQAA  180
GEAPFRKARV SVRARSEAPS ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA VACPVRKQVQ  240
RSAEDKSILI TTYEGNHKHP LPPAATAMAA TTSAAAAMPL SGSTTTTPNH HHKYFPFSSP  300
HFPFPSSSFL PRHHFPYSPP ATLSASAPFP TITLDLTNSP PPPQLVGHPL YNNNNNKFIM  360
PFVDPTRGSD GGSTMMDTMT AAIASDPNFT AGGAGVWGGC TGGGVRGXXX XXXXXTGVHG  420
GCFAWVATTS AVLHYFLHQL ICV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21188264176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038028
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022770721.11e-100probable WRKY transcription factor 47 isoform X1
TrEMBLA0A1R3H1B01e-100A0A1R3H1B0_COCAP; DNA-binding WRKY
STRINGLus100380280.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-58WRKY family protein