PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037942
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 450aa    MW: 48192.8 Da    PI: 7.0194
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037942genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017197219123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  Lus10037942 197 YECKTCSRTFPSFQALGGHRASH 219
                  99**********99999998887 PP
2zf-C2H211.90.00068317339123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +Cg  F++   L  H+r+H
  Lus10037942 317 HECAICGAEFNSGQALGGHMRRH 339
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.03E-8196219No hitNo description
PfamPF139126.9E-13196221IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45197224IPR007087Zinc finger, C2H2
SMARTSM003550.11197219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SuperFamilySSF576679.03E-8312339No hitNo description
PfamPF139122.4E-12316341IPR007087Zinc finger, C2H2
SMARTSM003550.061317339IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702317344IPR007087Zinc finger, C2H2
PROSITE patternPS000280319339IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEAAGATKEA STVGAHTVDT VDPVIPTAAA EVEVKAETTV MHIHKEEEVL PPTLPSSDDG  60
VTVLNPVPIS QIIKGKRTKR QRVRSPVASD FSSIGDDDDY VYEEDEEIID DDSRSSYVQL  120
QPPTKEEEDM ANCLILLAQG NSVISNNHIT IISSPNITTN NNGKFTSRRF MEAATGGGLD  180
CGGGGRGGGG KAGYYVYECK TCSRTFPSFQ ALGGHRASHK KPKNINSNNN NSSSMLSMMI  240
GGGDQNNKTF NNNNNSHIND SIRDMNSCLN LQLNSGGGRV NVGGFTSYYN NINRTSSMFN  300
NNNKGMMNNN NNSSKVHECA ICGAEFNSGQ ALGGHMRRHR APATSAAPPS PAAAGFSLLN  360
NNTNRNSQSF VNGNGYHNHN NGNNNRNGGY GGSSSNNNNN HNGKRGRSMS LELDLNLPAP  420
EEKQQQPPPS PQKKPSLVFE SPALVDCHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037942
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100379420.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-21C2H2 family protein