PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037939
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 405aa    MW: 45349.4 Da    PI: 6.2015
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037939genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-52321591128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+evdiyk ePwdL   +++k++++ewyfFs  dkky +g r nrat +gyWkatgkd+e+ + +
  Lus10037939  32 LAPGFRFHPTDEELVIYYLKRKVGNKPVRF-NAIAEVDIYKNEPWDLAdkSRLKSRDQEWYFFSALDKKYGNGARMNRATGKGYWKATGKDREIRR-D 127
                  579************************999.89**************75348899999*************************************9.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++l  +kktLvf++grap g++t+Wvmheyrl
  Lus10037939 128 NQLLAMKKTLVFHSGRAPGGQRTNWVMHEYRL 159
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-5931184IPR003441NAC domain
PROSITE profilePS5100557.47832183IPR003441NAC domain
PfamPF023659.1E-2734159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MPRETCAPLP LVPASPLQSQ PPAVGASAGG VLAPGFRFHP TDEELVIYYL KRKVGNKPVR  60
FNAIAEVDIY KNEPWDLADK SRLKSRDQEW YFFSALDKKY GNGARMNRAT GKGYWKATGK  120
DREIRRDNQL LAMKKTLVFH SGRAPGGQRT NWVMHEYRLV DEELERMGTL QGDSYVLCRV  180
FHKNNIGPPN GNRYAPFLEE EWDDSRAVLV PGEDVADEVV ACNEMNNMEQ NESVEMEGDA  240
PMCVLNTEAP FPLIQYKRRK HGHDYDSNGS EKSRTTQDLC SSTTTTATTT TNTTDMMMTT  300
TAATNTAISA LLEFSLMEPK ERTPAPPPSP KEPPFPPASL ESLVPSGCMK LINDLQREVH  360
KVSVERETLK MEVMSAQAMI YILQSRIDAL NKENGDLKRS LREG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-493218520170NAC domain-containing protein 19
3swm_B4e-493218520170NAC domain-containing protein 19
3swm_C4e-493218520170NAC domain-containing protein 19
3swm_D4e-493218520170NAC domain-containing protein 19
3swp_A4e-493218520170NAC domain-containing protein 19
3swp_B4e-493218520170NAC domain-containing protein 19
3swp_C4e-493218520170NAC domain-containing protein 19
3swp_D4e-493218520170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037939
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024336.10.0PREDICTED: NAC transcription factor NAM-A1
SwissprotQ9SQX91e-142NAC50_ARATH; NAC domain containing protein 50
TrEMBLR4NFV50.0R4NFV5_JATCU; NAC transcription factor 043
STRINGLus100379390.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-138NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]