PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037738
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CAMTA
Protein Properties Length: 929aa    MW: 104398 Da    PI: 7.1668
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037738genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1163.92.7e-51341503118
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e ++rwl+++ei+aiL n++ +++  ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++n+tf rrcy
  Lus10037738  34 DEaRSRWLRPNEIHAILCNHKYFTIFVKPLNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGTEERIHVYYAHGQDNQTFVRRCY 131
                  4559********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  wlL+++le+ivlvhy+e++
  Lus10037738 132 WLLDKALEHIVLVHYRETQ 150
                  ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.75729155IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-7432150IPR005559CG-1 DNA-binding domain
PfamPF038595.8E-4535148IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.9E-6369468IPR013783Immunoglobulin-like fold
PfamPF018331.2E-7379465IPR002909IPT domain
SuperFamilySSF812964.76E-16380466IPR014756Immunoglobulin E-set
CDDcd002049.33E-14564674No hitNo description
PfamPF127962.0E-6565644IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.6E-15573677IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.32E-14573676IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.167582647IPR020683Ankyrin repeat-containing domain
SMARTSM002481.6E-5615644IPR002110Ankyrin repeat
PROSITE profilePS5008811.968615647IPR002110Ankyrin repeat
PROSITE profilePS500966.577763789IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.13E-5773849IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001532778800IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.657779806IPR000048IQ motif, EF-hand binding site
PfamPF006120.024781799IPR000048IQ motif, EF-hand binding site
SMARTSM000150.091801823IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.938802826IPR000048IQ motif, EF-hand binding site
PfamPF006120.011804822IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.13E-5881909IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001523881903IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.693883911IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MASLVATDVP ARLVGSEIHG FHTLQDLDIR NILDEARSRW LRPNEIHAIL CNHKYFTIFV  60
KPLNLPKSGT IVLFDRKMLR NFRKDGHNWK KKKDGKTIKE AHEHLKVGTE ERIHVYYAHG  120
QDNQTFVRRC YWLLDKALEH IVLVHYRETQ ELQSSPVTPP NSNTRSVSDP STPWPSAEEF  180
DSGADNAYPA GDKEFIDPGL FPVKDHQLRL HEINTLEWDD LVAGDPNNLT TFQGDVSSYL  240
VDQNQIAVNG SSIYNALSAS NISEGVTSIN QIIDPCLNSG TTYSSTADGT YSQTANRLIN  300
SNTQSIDRQA VAHDSTLDYL VDNGLQSQDS FGRWMDDVMA KSADSLDDHL LQPHISSGNG  360
LSTSPASVQH QYSADHSFVI TDVSPSWGFS DETTKVLVTG YFHEQFVHLG NSDLVCVCGD  420
DFVPTEVVQS GVYRCFLPPH SPGLVNLCLS LDGHKPLSQV LNFEYRRPAQ HDVVVSKDEN  480
SKWEHFHLQL RLACLLLSTS KSLNLLSSKI SPSNLKDAKK YASRTSTISG NWSFLFKSIE  540
ENRVSLAQAK DDMFEITLKN ILKEWLLERV AEGGKATEYD TGGLGVIHLC ARLGYTWAIY  600
LYSWSGLSLD YRDKHGWTAL HWAAYDGRER MVAVLLSAGA KPNLVTDPTA ENPGGCTPGD  660
LAEGRGYEGL AAYLSEKALL SHFKDMSIAG NVCGTLQTTS VEPVKAENLT EEELYLKDAL  720
AAYRTAADAA GRIQAAFREQ SLKSRAKAIE VSSPEDEARS IVAAMKIQHA FRNYETKKKM  780
AAAVRIQYRF RTWKMRREFV NLRRQTIRIQ AAFRGFQVRR QYGKILWSVG VLEKAVLRWR  840
MKRKGLRNLK VEAPKSIQED VQPSDTEEEF FKTGRKHAEE RVERAVVTVQ SMFRSKKAQA  900
EYRRMKLAYN EASLEYEGLL SPDTDMGK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037738
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2081395e-41AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021637155.10.0calmodulin-binding transcription activator 5 isoform X5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLB9HWX40.0B9HWX4_POPTR; Uncharacterized protein
STRINGLus100377380.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]