PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10037675

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HB-other

Protein Properties

Length: 2000aa MW: 223751 Da PI: 8.348

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10037675	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.6	5.7e-05	1007	1043	21	55
H..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 k..nrypsaeereeLAkklgLterqVkvWFqNrRake 55 + n+ +s +e e++A+ l+Lt +qV ++ N+R+++ Lus10037675 1007 EsaNKRLSYKECEKIAMDLKLTLQQVLHFYYNKRYRY 1043 345999****************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.29E-5	198	252	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF04182	3.3E-17	203	282	IPR007309	B-block binding subunit of TFIIIC
Gene3D	G3DSA:1.10.10.10	2.8E-5	212	253	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.60	4.7E-4	992	1043	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2000 aa Download sequence Send to blast
MGLRPLANLF RPNNLKIPGP VRIRSRLSRS SKYPLLSVSL LHLLPPLYQF SGFLGRSTLS 60 LSILFARCRP NQFNQPLSPD SSSASNLYPP HAAVSMDALI SSALEEVCYR GTAGVLLSSL 120 WSKLTPPPSP AVKASLWSNL VSIPTVQFVV QGEEAAAPLS PQDRRIQRVE DAEKLKVKIV 180 AKEQLRDSFV GLYDVPSTGF KPLQRQALER LAIAREDGIT QMELAKEFGM EGRNFFYIVK 240 NLESRNLIVR QPATVRTMEA GGAGETKSCV RTNLMFLSRY ATRLDVQQIL EINKEEQDLV 300 SPDELREADV DEEESSAGDR LKDDVLVKDY LPAMQAICDK LEGANGNVLV VSDIKKELGY 360 SGYHGHKAWR LIFQKLKEAA LVEGFDAKVN EKVEHCIRLL KKFSPDVCET KLSRGSSACD 420 RNKQLKFGRR PKRNEQLLEL PIDHQIFDVI ATKGTKGATG IEVCSRLGLE KKKTYERFND 480 LISRFGMRCQ AESHKKTAIY RYWTPASYNS QASNPRVGKL ETSAGLGASA FAPVHTDVPK 540 KSTEFSSMNN HLISGVDSTD KRHVSDGGMG TETLKGAASC SKFIENGRAN SGQVLDIDHM 600 SKGATSSAGP DVRSNGTSSE TSQITLLKQP SSHQIPLTAD TALREKRILE RLQEEKILLR 660 VVLHKWLISL EKDKGITMGR RTIDRILNKL QEEGHCRCVT FYVPSVTNCG RSRMAHVILH 720 PSIDSVLPEQ VYDKLREFEK QSRQASSRCN AKDSIPVLSD VIRTQVPVDL DDQTAKSETI 780 RFNGFVLAKM VRAKLLYNVL WEFLRTLDGW DDTLLSSLKV FSLQAAVKTI PLEVFLQVAG 840 STQKVDNLVE KCKLGLRLSD LPVEEYKSLV DTLASSRLSK IVDILRRLKL IRLIPVAHSE 900 DGLMLPHAMF IDAMELKPYI EEPPSIVAKT DDLRPRYRHD FFLSSKEAVD DYWNTLEFCY 960 AAADPKAASL AFPGSAVPEV FSQPAWKSAR VMSAEKRTEL LKRIANESAN KRLSYKECEK 1020 IAMDLKLTLQ QVLHFYYNKR YRYPDTSVNT NIEDPQPADR SRRASSRKRK KSSQNNSQKD 1080 HIVDDELAEP EVAELSDGAG RDMKRQCPLF PGEDDHNFPV DREQCPEETV INSLHADSNQ 1140 LSQYALSKIK SRREKRFLWT DDADRLLITQ YARQRAILGV RFHRVDWNQV SCLPGPPRTC 1200 ARRITTLKRD KTLRKALMRL CNILSERYVK YLEKSQSTRE SNNLTRVLHP CSTAGDSAGQ 1260 APGINYTDEA GSEEDQWDDF NERSIKEAFD EIILYKQVNR KGGKAADEWS NLQGDVDGYN 1320 VQEFGSYSPS DNVQVGHDKR KESRKKIKHH KLHEKFMKCL SESSDAGRQL YKSVAVSNAV 1380 ELLKLVFLSS STTPELQNML GETLRHYSEH DVFAAFSYLR ENKILIGSSG GPFVLSQQFL 1440 HNISRSHFPT NTGKRAARFS NWLHKGNNFG AGGSIDLKED LHCGDIFQLF ALVSSGEMSL 1500 SLCLPGEGLG MADDQRSSKR KPEDDGLCDR GKAKKLKPIA DSETCSRREK GFPGIRVSIC 1560 CATILPVNAL DSLNDGENGI DISQKDKIDN RFPDFDSITP SARISSQSSW ETMADYANYL 1620 HENASDLTEG SSFSSEVFRA TYTAIHKAGD QGLGIEEVSD TLAMAGENMG EFVVDVLQTF 1680 GRVLKVNAYD SVHVVDALYR SKYTLTLKTT LDGDPKPPTV IEPSETSEDG FRVFQPQNND 1740 VNDPRPLPDK DVHKVTILNL PDEVAISMEP QTSNSQETNL EDQEIVDFPE HHTDGKTYIP 1800 IFPWINGDGT TNKAVYRGLL RRALGTVMQN PGILEEDIIK RMDVLNPQSC KKLLELMILD 1860 SHLIVRKMNQ QSANAPPSLL GSLLRNSFSM PKSPCCSLFL PNQKWIMPSP KRSQQVGVYS 1920 PTLRCSSGES RISSSLKNAR PRAGRKLVRT IKCTSGEQGV AKVVVTPVSS LEIPSPNFGE 1980 RTSCYPFVAP LIYLNNYMD*

Sequence ? help Back to Top

Protein Sequence Length: 2000 aa Download sequence Send to blast

MGLRPLANLF RPNNLKIPGP VRIRSRLSRS SKYPLLSVSL LHLLPPLYQF SGFLGRSTLS  60
LSILFARCRP NQFNQPLSPD SSSASNLYPP HAAVSMDALI SSALEEVCYR GTAGVLLSSL  120
WSKLTPPPSP AVKASLWSNL VSIPTVQFVV QGEEAAAPLS PQDRRIQRVE DAEKLKVKIV  180
AKEQLRDSFV GLYDVPSTGF KPLQRQALER LAIAREDGIT QMELAKEFGM EGRNFFYIVK  240
NLESRNLIVR QPATVRTMEA GGAGETKSCV RTNLMFLSRY ATRLDVQQIL EINKEEQDLV  300
SPDELREADV DEEESSAGDR LKDDVLVKDY LPAMQAICDK LEGANGNVLV VSDIKKELGY  360
SGYHGHKAWR LIFQKLKEAA LVEGFDAKVN EKVEHCIRLL KKFSPDVCET KLSRGSSACD  420
RNKQLKFGRR PKRNEQLLEL PIDHQIFDVI ATKGTKGATG IEVCSRLGLE KKKTYERFND  480
LISRFGMRCQ AESHKKTAIY RYWTPASYNS QASNPRVGKL ETSAGLGASA FAPVHTDVPK  540
KSTEFSSMNN HLISGVDSTD KRHVSDGGMG TETLKGAASC SKFIENGRAN SGQVLDIDHM  600
SKGATSSAGP DVRSNGTSSE TSQITLLKQP SSHQIPLTAD TALREKRILE RLQEEKILLR  660
VVLHKWLISL EKDKGITMGR RTIDRILNKL QEEGHCRCVT FYVPSVTNCG RSRMAHVILH  720
PSIDSVLPEQ VYDKLREFEK QSRQASSRCN AKDSIPVLSD VIRTQVPVDL DDQTAKSETI  780
RFNGFVLAKM VRAKLLYNVL WEFLRTLDGW DDTLLSSLKV FSLQAAVKTI PLEVFLQVAG  840
STQKVDNLVE KCKLGLRLSD LPVEEYKSLV DTLASSRLSK IVDILRRLKL IRLIPVAHSE  900
DGLMLPHAMF IDAMELKPYI EEPPSIVAKT DDLRPRYRHD FFLSSKEAVD DYWNTLEFCY  960
AAADPKAASL AFPGSAVPEV FSQPAWKSAR VMSAEKRTEL LKRIANESAN KRLSYKECEK  1020
IAMDLKLTLQ QVLHFYYNKR YRYPDTSVNT NIEDPQPADR SRRASSRKRK KSSQNNSQKD  1080
HIVDDELAEP EVAELSDGAG RDMKRQCPLF PGEDDHNFPV DREQCPEETV INSLHADSNQ  1140
LSQYALSKIK SRREKRFLWT DDADRLLITQ YARQRAILGV RFHRVDWNQV SCLPGPPRTC  1200
ARRITTLKRD KTLRKALMRL CNILSERYVK YLEKSQSTRE SNNLTRVLHP CSTAGDSAGQ  1260
APGINYTDEA GSEEDQWDDF NERSIKEAFD EIILYKQVNR KGGKAADEWS NLQGDVDGYN  1320
VQEFGSYSPS DNVQVGHDKR KESRKKIKHH KLHEKFMKCL SESSDAGRQL YKSVAVSNAV  1380
ELLKLVFLSS STTPELQNML GETLRHYSEH DVFAAFSYLR ENKILIGSSG GPFVLSQQFL  1440
HNISRSHFPT NTGKRAARFS NWLHKGNNFG AGGSIDLKED LHCGDIFQLF ALVSSGEMSL  1500
SLCLPGEGLG MADDQRSSKR KPEDDGLCDR GKAKKLKPIA DSETCSRREK GFPGIRVSIC  1560
CATILPVNAL DSLNDGENGI DISQKDKIDN RFPDFDSITP SARISSQSSW ETMADYANYL  1620
HENASDLTEG SSFSSEVFRA TYTAIHKAGD QGLGIEEVSD TLAMAGENMG EFVVDVLQTF  1680
GRVLKVNAYD SVHVVDALYR SKYTLTLKTT LDGDPKPPTV IEPSETSEDG FRVFQPQNND  1740
VNDPRPLPDK DVHKVTILNL PDEVAISMEP QTSNSQETNL EDQEIVDFPE HHTDGKTYIP  1800
IFPWINGDGT TNKAVYRGLL RRALGTVMQN PGILEEDIIK RMDVLNPQSC KKLLELMILD  1860
SHLIVRKMNQ QSANAPPSLL GSLLRNSFSM PKSPCCSLFL PNQKWIMPSP KRSQQVGVYS  1920
PTLRCSSGES RISSSLKNAR PRAGRKLVRT IKCTSGEQGV AKVVVTPVSS LEIPSPNFGE  1980
RTSCYPFVAP LIYLNNYMD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1059	1070	RSRRASSRKRKK
2	1066	1070	RKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10037675

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021679710.1	0.0	uncharacterized protein LOC110664370 isoform X1
TrEMBL	B9S5R8	0.0	B9S5R8_RICCO; Uncharacterized protein
STRING	Lus10037675	0.0	(Linum usitatissimum)

Link Out ? help Back to Top
Phytozome	Lus10037675