PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037673
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 336aa    MW: 38261.2 Da    PI: 7.7953
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037673genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.4e-066485223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C+ Cg +F+ + +L+ Hir+H
  Lus10037673 64 TCEECGACFRKPAYLREHIRSH 85
                 6********************9 PP
2zf-C2H215.26.1e-0591115123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  +kC+   C+ s++rk++L+rH+  H
  Lus10037673  91 FKCTveGCHASYRRKDHLNRHLLQH 115
                  89*******************9887 PP
3zf-C2H213.20.00028174196423
                  T..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   4 p..dCgksFsrksnLkrHirt.H 23 
                      Cgk Fs+   Lk Hi+  H
  Lus10037673 174 LepGCGKNFSNEQCLKAHIQAsH 196
                  5559***************9877 PP
4zf-C2H216.82e-05232255323
                  ET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                  C+   Cg +Fs+k nL++H +  H
  Lus10037673 232 CGhdGCGLTFSSKTNLNKHVKAvH 255
                  88889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355292244IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.5476390IPR007087Zinc finger, C2H2
SMARTSM003550.0156385IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-76385IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576676.34E-1077116No hitNo description
Gene3DG3DSA:3.30.160.603.8E-1286116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002991115IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.70491115IPR007087Zinc finger, C2H2
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SMARTSM003550.41120145IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829120145IPR007087Zinc finger, C2H2
PROSITE patternPS000280122145IPR007087Zinc finger, C2H2
SMARTSM003550.11171196IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538171196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-4172192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280173196IPR007087Zinc finger, C2H2
SMARTSM0035523199220IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.23E-8214265No hitNo description
SMARTSM003550.0018230255IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.843230260IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-6231255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280232255IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-4256283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549261287IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEKEMEEAQD STYTTTSDIR RYLCKYCGIS RSKKYLISSH ILSHHKDEMS DEEEEAEEGT  60
KSNTCEECGA CFRKPAYLRE HIRSHSLERP FKCTVEGCHA SYRRKDHLNR HLLQHKEKLF  120
KCPVESCTRE FVLESDVEGH VRDKHCKSAG ADGLKQYVCE EPGLKLDSIE AVCLEPGCGK  180
NFSNEQCLKA HIQASHQHIN CEICGSKHLK KNIKRHLRSH EAVSESTQRV SCGHDGCGLT  240
FSSKTNLNKH VKAVHLEAKP FACGFPPCGM RFSYKHVRDN HEKSGCHVYT CGDFEESDEQ  300
FRSRPRGGMK RTCPSVETLL TRKRVTTPHE VENCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-135728416183Aart
2i13_B3e-135728416183Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037673
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376244.11e-150transcription factor IIIA
SwissprotQ84MZ41e-120TF3A_ARATH; Transcription factor IIIA
TrEMBLU5FVV91e-149U5FVV9_POPTR; Uncharacterized protein
STRINGLus100376730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-120transcription factor IIIA