PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037568
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 846aa    MW: 92750 Da    PI: 6.4212
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037568genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.86.5e-172179357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l+ ++++ps  +r++  + +    +++ +q+kvWFqNrR +ek+
  Lus10037568 21 KYVRYTPEQVEALERLYLECPKPSSIRRQQFIRDCptlsNIEPKQIKVWFQNRRCREKQ 79
                 5679*****************************************************97 PP
2START179.61.8e-561653732205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v+ +   g+++l +++
  Lus10037568 165 IAEETLTEFISKATGTAVEWVQMPGMKPGPDSIGIVAISHGCIGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRSVDVVNVLPTTngGTIELLYMQ 261
                  789*******************************************************.8888888888***************87667********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  l++g++ i+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++s+++ 
  Lus10037568 262 LYAPTTLAPaRDFWLLRYTSVLEDGSLGICERSLKNTQNGPSmppAQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLEPWSVPEVLRPLYESSIVL 359
                  ****************************************999999**************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++kt++a+l+++++
  Lus10037568 360 AQKTTMAALRHLRQ 373
                  *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.7061680IPR001356Homeobox domain
SMARTSM003894.1E-121884IPR001356Homeobox domain
SuperFamilySSF466896.42E-152082IPR009057Homeodomain-like
CDDcd000863.06E-142181No hitNo description
PfamPF000461.8E-142279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-172379IPR009057Homeodomain-like
CDDcd146868.44E-673112No hitNo description
PROSITE profilePS5084825.314155369IPR002913START domain
CDDcd088757.96E-80159375No hitNo description
Gene3DG3DSA:3.30.530.203.2E-22164370IPR023393START-like domain
SMARTSM002342.3E-43164374IPR002913START domain
SuperFamilySSF559612.75E-38164376No hitNo description
PfamPF018525.8E-54165373IPR002913START domain
PfamPF086701.8E-50700844IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MAMSYKDGNK NAQMGNLDNG KYVRYTPEQV EALERLYLEC PKPSSIRRQQ FIRDCPTLSN  60
IEPKQIKVWF QNRRCREKQR KESSRLQGVN RKLTAMNKLL MEENDRLQKQ VSHLVYENSY  120
FRQHTQKTSP STKDAGCDSV VTTGQHHLTP QHPPRDASPA GLLSIAEETL TEFISKATGT  180
AVEWVQMPGM KPGPDSIGIV AISHGCIGVA ARACGLVGLE PTRVAEILKD RPSWFRDCRS  240
VDVVNVLPTT NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SVLEDGSLGI CERSLKNTQN  300
GPSMPPAQHF VRAEMLPSGY LIRPCEGGGS IIHIVDHVDL EPWSVPEVLR PLYESSIVLA  360
QKTTMAALRH LRQIAQEFSQ TNVSNSGRRP AALRALSQRL SRGFNEALNG FTDEGWSMLG  420
NDGMDDVTIL VNTSPDKLMG LNLPFSNGFQ SVTNSVLCAK ASMLLQNVPP AILLRFLREH  480
RSEWADNGID AYSAAAIRVG PCSLPGAHVG SFGGQVILPL AQTMEHEEFL EVVKLESVVN  540
SPEEAMMPPR DIFLLQLCSG MDENAIGTCA ELIFAPIDAS FADDAPLLPS GFRIIPLDSG  600
KEATSPNRTL DLASALEIGP AGSKGAKDSS TSSGSVRSVM TIAFEFAFES HMQEHVAVMA  660
RQYIRSIISS VQRVALALSP SNLGSLAGLR SSLGTPEAQT LARWINQSYR VYLGVELLKS  720
NSEGGGGESI LKSLWHHSDA MLCCSLKAMP VFTFANQAGL DMLETTLVAL QDINLEKIFD  780
DNGRKTLCSE FPQIIQQGYA CLAGGICMSS MGRPASYEKA VAWKVLNEEE NAHCICFMFV  840
NWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037568
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515977.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLB9RQF80.0B9RQF8_RICCO; DNA binding protein, putative
STRINGLus100375680.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]