PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037484
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 383aa    MW: 41752.2 Da    PI: 7.9995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037484genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12316361655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR +i +++ +L+el Pk     +k  + +e+L +Av+YIk+Lq
  Lus10037484 316 SIAERVRRTKISERMRKLQELFPKT----DKQTNTSEMLDMAVDYIKDLQ 361
                  689*********************8....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.075310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-14313375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-11314365No hitNo description
Gene3DG3DSA:4.10.280.101.5E-14315371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSMIYSPNLK YPDGELGIKN GFQLDYHQLP LDLSPNFSNA TYNQQLQGNN SGLARLRSAP  60
SSFLADLVNG GSSDSIGFDD FRFFRPPSPD IDAIFGELQG FGEAAVKKEA AADSEIGSYN  120
NLGGDHTTSS CIDTTTFSSV LGPSSSSFAA GSGNGSNLAR HNSSPAGFFS SIVVENGFHG  180
VGEANPSTRS NSGSKLRRST QLPKISEIGE ETFLSTTSSN SGKRPYSSSV NISWDNASWS  240
TGNKKLKQDR RDDDDLDLFG LDNLQQQNGG SRLSHHLSLP KTAAEMESIE KFLQLQSGAV  300
PCKIRAKRGF ATHPRSIAER VRRTKISERM RKLQELFPKT DKQTNTSEML DMAVDYIKDL  360
QKQVQNLRDT KARCTCLREH TA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021651845.13e-92transcription factor bHLH130-like isoform X2
RefseqXP_021651846.13e-92transcription factor bHLH130-like isoform X2
RefseqXP_021651847.13e-92transcription factor bHLH130-like isoform X2
SwissprotQ66GR31e-54BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A067LGX82e-90A0A067LGX8_JATCU; Uncharacterized protein
STRINGLus100374840.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]