PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10037468

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 448aa MW: 48820.5 Da PI: 9.8472

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10037468	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	390	411	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ CgksF r++ L+ H+++ + Lus10037468 390 TCTQCGKSF-RPEKLHMHMSRsC 411 6******.*******9977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	4.1E-35	32	181	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MDVATSFNNG GMMGSNGGGG GGGGGGEFRR LHIVYFLTRM GRIEHPHLIR VRHLNRNGGV 60 FLRDVKRWMG ELRGKDLPDS FSWSYKRRYK TGYIWQDLID DDLITPISDN EYVLKGSEIT 120 TDDEIPVAVP LKETATSSPS SSSSSSTTFE MVPGSTVQSN VVSKDQEQGN HHHLEPFSVG 180 TKHYSNQSYS STGSSTSSSS PIVDRPLTTS PIVVDKTTVI GSGGDVRDSP TISPYYTYTF 240 DHRNKCQEYS SPSPTTGRCS QSPAMKSRRS WRQRYYSNAA SSRVMLRRLM VCGGAPADTA 300 GVDAVLVAVN KSTSTVQGNG TVNTQSTSAA KNRALVGTAH ELQLKLHRDQ SARRRKEESE 360 GSNRKGSSQS GLFCRKTDVS EAYRPVGAPT CTQCGKSFRP EKLHMHMSRS CRGMRKDSTA 420 SPDEEMASPT SPCKPFVKKQ LITATTA*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MDVATSFNNG GMMGSNGGGG GGGGGGEFRR LHIVYFLTRM GRIEHPHLIR VRHLNRNGGV  60
FLRDVKRWMG ELRGKDLPDS FSWSYKRRYK TGYIWQDLID DDLITPISDN EYVLKGSEIT  120
TDDEIPVAVP LKETATSSPS SSSSSSTTFE MVPGSTVQSN VVSKDQEQGN HHHLEPFSVG  180
TKHYSNQSYS STGSSTSSSS PIVDRPLTTS PIVVDKTTVI GSGGDVRDSP TISPYYTYTF  240
DHRNKCQEYS SPSPTTGRCS QSPAMKSRRS WRQRYYSNAA SSRVMLRRLM VCGGAPADTA  300
GVDAVLVAVN KSTSTVQGNG TVNTQSTSAA KNRALVGTAH ELQLKLHRDQ SARRRKEESE  360
GSNRKGSSQS GLFCRKTDVS EAYRPVGAPT CTQCGKSFRP EKLHMHMSRS CRGMRKDSTA  420
SPDEEMASPT SPCKPFVKKQ LITATTA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10037468

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10037468	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20

Link Out ? help Back to Top
Phytozome	Lus10037468