PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037323
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 300aa    MW: 33492 Da    PI: 10.2375
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037323genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.8e-132112891798
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                  ++p +  e ++++  ++  l+  +  ++sW+vk   ++++ +y + +GW +F+++n +kegD++ F+l+++ ++  l+v++++
  Lus10037323 211 TIPSSISELYMKQ--NPEILK-LQVGSKSWRVKA-TKGNGHSYRMYGGWLDFARENSVKEGDICCFELMDKdDDIVLKVTICN 289
                  6777777666544..332344.45588*******.4666666*************************9976699999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-16186288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-14189287IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-11191289No hitNo description
SMARTSM010191.3E-5194291IPR003340B3 DNA binding domain
PROSITE profilePS5086310.8195291IPR003340B3 DNA binding domain
PfamPF023623.8E-11209289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAEPEATVDG RRRPEGRLLF DSGTLRFSKF ISRQTLNTSR LYTLVFQYDR AALFSVFIFD  60
ACGSEIEYPL LDVAAGVGKK LHTHSPEMPR KRSRSDSYSP KRHAMAATGG STRTNDHGGS  120
SSRAPAESER LVSRSRGCNG KQLFREERSN VQETCAMAAA LSSRWKDTSG NQWSKERSSW  180
KNSKPSKAKN PGFNVTLGKR SDFFLFLGTQ TIPSSISELY MKQNPEILKL QVGSKSWRVK  240
ATKGNGHSYR MYGGWLDFAR ENSVKEGDIC CFELMDKDDD IVLKVTICNT LLVAKKMLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11017RRRPEGRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037323
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100373230.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-17B3 family protein