PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10037205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 477aa MW: 51693.8 Da PI: 7.8067 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.4 | 1.7e-29 | 192 | 251 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+ +d +v+++tYeg Hnh+ Lus10037205 192 MKDGCQWRKYGQKIAKGNPCPRAYYRCTLSpTCPVRKQVQRCVDDMTVLITTYEGAHNHP 251 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-31 | 178 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.06E-26 | 185 | 253 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.162 | 187 | 253 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.7E-35 | 192 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.1E-26 | 193 | 251 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MIRSAEAEMG SVKEENERLK QLLSKLVNDY HSLRTHFLKI RSDDRTVKPD PAAAEEEEES 60 DEQLFSLSLG RTSRELPKKI VQVEPTTTKK RKLAEGGLSL GLVDYSEVAA AAADNNNSNS 120 GSEEEEEAAV VVAEAWPPSK VLKTMRNNSN NNNTNSSSSS DDREDQLQQP LLQPQLKKVR 180 VSIRARVDTP TMKDGCQWRK YGQKIAKGNP CPRAYYRCTL SPTCPVRKQV QRCVDDMTVL 240 ITTYEGAHNH PLPYSATAMA STTAAAASML QSCSSSSSLP LSTISAPSQT TTTPQNPNHH 300 FYFPNSSIST CNSHPTITLD LTTPSASVSL AAMNARSSIP PPSTYSSASN TLDFSRSTST 360 MMPCNASNLM MGYLLPKQPL PQPHLGQQGD YLYGRRHHQH VDDGRLLMTG GSSSADMSIA 420 AAAATKVITS NPSFRSALAA AITSFVAKAD HQGEQLQTSS FTLFQGSNNK KESDLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-19 | 180 | 253 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10037205 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1R3IIS1 | 2e-96 | A0A1R3IIS1_9ROSI; Cystathionine beta-synthase, core | ||||
STRING | Lus10037205 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 9e-50 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | Lus10037205 |