PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037205
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 477aa    MW: 51693.8 Da    PI: 7.8067
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037205genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29192251159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+ +d +v+++tYeg Hnh+
  Lus10037205 192 MKDGCQWRKYGQKIAKGNPCPRAYYRCTLSpTCPVRKQVQRCVDDMTVLITTYEGAHNHP 251
                  58**************************999****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-31178253IPR003657WRKY domain
SuperFamilySSF1182901.06E-26185253IPR003657WRKY domain
PROSITE profilePS5081128.162187253IPR003657WRKY domain
SMARTSM007746.7E-35192252IPR003657WRKY domain
PfamPF031069.1E-26193251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MIRSAEAEMG SVKEENERLK QLLSKLVNDY HSLRTHFLKI RSDDRTVKPD PAAAEEEEES  60
DEQLFSLSLG RTSRELPKKI VQVEPTTTKK RKLAEGGLSL GLVDYSEVAA AAADNNNSNS  120
GSEEEEEAAV VVAEAWPPSK VLKTMRNNSN NNNTNSSSSS DDREDQLQQP LLQPQLKKVR  180
VSIRARVDTP TMKDGCQWRK YGQKIAKGNP CPRAYYRCTL SPTCPVRKQV QRCVDDMTVL  240
ITTYEGAHNH PLPYSATAMA STTAAAASML QSCSSSSSLP LSTISAPSQT TTTPQNPNHH  300
FYFPNSSIST CNSHPTITLD LTTPSASVSL AAMNARSSIP PPSTYSSASN TLDFSRSTST  360
MMPCNASNLM MGYLLPKQPL PQPHLGQQGD YLYGRRHHQH VDDGRLLMTG GSSSADMSIA  420
AAAATKVITS NPSFRSALAA AITSFVAKAD HQGEQLQTSS FTLFQGSNNK KESDLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-19180253274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037205
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1R3IIS12e-96A0A1R3IIS1_9ROSI; Cystathionine beta-synthase, core
STRINGLus100372050.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.19e-50WRKY DNA-binding protein 72