PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037190
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 436aa    MW: 45289.4 Da    PI: 7.8006
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037190genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.82.3e-3991235289
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                  ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++          
  Lus10037190  91 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTVSAShhrhtssyfa 188
                  789******************************************************************88885555555555333323334456777 PP

          TCP  89 ..............................................k 89 
                                                                 
  Lus10037190 189 aaaaaaaggipsfanslgfssndvtaplflhgvptkqefhggggggG 235
                  77777777777777777777777777777777776666555555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-4095262IPR005333Transcription factor, TCP
PROSITE profilePS5136927.58297151IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEPENGIRRQ IINFPLQLLE KNTTSNSHHH HHNPNNNNTN KPTNSSQFFQ LHHQPPPSSS  60
ASAAAAVDST SPHDQAITVV TPTTTTTKKP PPKRTSTKDR HTKVEGRGRR IRMPATCAAR  120
VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN FTSLNISLRS SGSTVSASHH  180
RHTSSYFAAA AAAAAGGIPS FANSLGFSSN DVTAPLFLHG VPTKQEFHGG GGGGGSSREE  240
DRSSPPEKSN DERKDQDRDR EQDLFASHQQ HHHHQMMMAA AAAGSFNYLL QSSSAGVIPA  300
SHGGGSSSST TVPATFWMMG GSGDPPSTYP SSSFIGGGVH HHVNAASSMY RGLHLMNFAG  360
GGGGGQHLGS STFVGGGGVD NSHLGVLATL NAAYRPMMMG GGGGSGNSLS GGASTDSSRN  420
HGGDGGEERD DNTGS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100371900.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-43TCP family protein