PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037178
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 475aa    MW: 52763.9 Da    PI: 7.512
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037178genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.4e-52331601128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk+++++ekewyfF++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++
  Lus10037178  33 MLPGFRFHPTDEELVGFYLKRKIHQRPLSI-ELIKQLDIYKFDPWDLPKMATTGEKEWYFFCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGN 129
                  579***************************.89***************9888999***************************************9566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + +glkk+Lvfykgra kg ktdW+mhe+rl
  Lus10037178 130 KCIGLKKSLVFYKGRAAKGFKTDWMMHEFRL 160
                  67***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-5927199IPR003441NAC domain
PROSITE profilePS5100557.06433199IPR003441NAC domain
PfamPF023653.7E-2635160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDSTERNSGS SCSNTNNNSM VEVVDKMEQQ EVMLPGFRFH PTDEELVGFY LKRKIHQRPL  60
SIELIKQLDI YKFDPWDLPK MATTGEKEWY FFCPRDRKYR NSARPNRVTG AGFWKATGTD  120
RPIYSSEGNK CIGLKKSLVF YKGRAAKGFK TDWMMHEFRL PSLSDHHHAP APAAAPSKRF  180
LDKTIPANDA WAICRIFKKT NSTAQRTLSQ SWVSPMVQEV VHPTTFTSEG DDHFTMNSSS  240
ITIPPTPPIH YFNYNNNNNI TIDHQTHNQY SSPSYSYNQY TNNLLLSPTM DHFGSLKPII  300
NNTTNIPLAP KPSYLHLQNY YPSFSTMGDH HHHHEASAKS TLDLSSILLN MASSSSILLG  360
DFKQQGGGGG GGDHESVSSV DQFSSGSQQS NGNGGGGGLI SPLMNLVDHQ NEPTMMMKGS  420
SFANIDAIPF NCLGDGAGAW KQNLLLWDNY ANSSSPCPSS DQVPSTFSTT KCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-543520619171NO APICAL MERISTEM PROTEIN
1ut4_B8e-543520619171NO APICAL MERISTEM PROTEIN
1ut7_A8e-543520619171NO APICAL MERISTEM PROTEIN
1ut7_B8e-543520619171NO APICAL MERISTEM PROTEIN
4dul_A8e-543520619171NAC domain-containing protein 19
4dul_B8e-543520619171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037178
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362098.11e-135putative NAC domain-containing protein 94
TrEMBLB9S8V81e-131B9S8V8_RICCO; NAC domain-containing protein, putative
STRINGLus100371780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-99NAC family protein