PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037167
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 402aa    MW: 43120.2 Da    PI: 6.6919
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037167genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1275.6e-40117177262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++s
  Lus10037167 117 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKATS 177
                  7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.3E-32119175IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-28120174IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.826121175IPR003851Zinc finger, Dof-type
PROSITE patternPS013610123159IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSDFKLFGQT ILFPLHEQQQ QRRGVEDGSS FSSSTSSGSN HDREEDEEAC LDERCSGSEG  60
DANMDQSGND ETNDENRGIG SSKDHKQSGD KGGKSDQSET TTSSSQQQQQ DKTLKKPDKI  120
LPCPRCNSME TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR RKNKATSSTA  180
VSQQQQQYNQ IIVSEALRSA HHQSHVMNGG GTTLLSFQSD SPLCESVASI LNISESAQAG  240
FQPRRGATGN VDDCSGGFSV TGSNSSDKVV NSCQGFSWPF AVPPPGFCPP GYPISFYPAP  300
VPVPPPYWGC AAVPAIPWNG AQCVTPLSPK AASSTNSSPA TSPLGKHSRD GGEFVRSDDG  360
GLSEEPPLRK MSNASSSSNR RVVVPKTLRI DDPNDAAKSS I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611541.11e-97cyclic dof factor 3-like isoform X2
TrEMBLA0A251KVI77e-95A0A251KVI7_MANES; Uncharacterized protein
STRINGLus100371670.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.23e-49cycling DOF factor 2