PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037166
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 382aa    MW: 42894.7 Da    PI: 5.8971
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037166genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF565e-181053245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 + en+  rq t+ kR++gi+KKA+EL +LCd+   +++fs+tgk
  Lus10037166 10 KLENTNGRQATYGKRKHGIMKKASELAILCDIPLILLMFSPTGK 53
                 6799**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.343153IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-23294IPR002100Transcription factor, MADS-box
CDDcd002664.20E-22283No hitNo description
PRINTSPR004042.6E-14323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-161154IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQAT YGKRKHGIMK KASELAILCD IPLILLMFSP TGKPALCKGK  60
RSIEEVMSKF AQLAPQERTK RKMESLEALK KTFKKLDHDV NIQEFLGSRL VSLCETSIDQ  120
DLVNQSNLLK NQLSETHKRL EYWENLDKVD SIELLGQMEN SVQESLSRIQ ELKDNLGKQQ  180
IGLLECHSQF QDEMQVPFGM NAEQQQVPPF QWLSNCDPQH IVFPDDHNLL SHRDVECSAS  240
SSYGGYSGYF YPGKGSDLSN SRQESGVSGI LNELNGNASL RMQLTGQYPF FPYNLNLLDD  300
RKFQPAVAEM SLLQEGAVDC NVNGSFEAPK PAYCNTPGSW ASTSGPCAVP TMFDDQLYSQ  360
VQPLVEFEQC CDPVYSFKTH T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020533759.11e-174agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_020533760.11e-174agamous-like MADS-box protein AGL30 isoform X2
RefseqXP_020533761.11e-174agamous-like MADS-box protein AGL30 isoform X2
TrEMBLA0A067KYG71e-172A0A067KYG7_JATCU; Uncharacterized protein
STRINGLus100371660.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.27e-81AGAMOUS-like 30