PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037131
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 430aa    MW: 47197.7 Da    PI: 9.5106
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037131genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.91.8e-32189245259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgy+WrKYGqK+vkgsefprsYY+Ct+++Cpv+kkvers   ++v+ei+Y+g+Hnh+
  Lus10037131 189 DDGYKWRKYGQKQVKGSEFPRSYYKCTHPKCPVTKKVERSL-KGQVTEIIYKGQHNHQ 245
                  8****************************************.9**************8 PP
2WRKY106.41.5e-33335393159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tY+g+Hnh+
  Lus10037131 335 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERAATDPKAVITTYKGKHNHD 393
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28185247IPR003657WRKY domain
SuperFamilySSF1182901.57E-25186247IPR003657WRKY domain
SMARTSM007746.2E-36188246IPR003657WRKY domain
PfamPF031062.6E-25189245IPR003657WRKY domain
PROSITE profilePS5081122.515189247IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-37320395IPR003657WRKY domain
SuperFamilySSF1182907.98E-30327395IPR003657WRKY domain
PROSITE profilePS5081138.584330395IPR003657WRKY domain
SMARTSM007744.8E-39335394IPR003657WRKY domain
PfamPF031066.4E-26336393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MAENEGRRRG PAAPAAAERT TVVSSSRPTT IALPPRSFGG DSTMFSGGGF AFSPGPMSLV  60
SSFFSDGEDN KSFSQLLAGV MSPAEVPSTK GEKGSANLSV APALPAASMF MVPPAICPAM  120
LLESPEFRMF SSQETYGVSN QQALARVPAP ALPHRETTKD NYFEPTKMVT YPDQGHQSSS  180
FIIVDKPADD GYKWRKYGQK QVKGSEFPRS YYKCTHPKCP VTKKVERSLK GQVTEIIYKG  240
QHNHQPPQSN KRGKDQASNV ELGSQFRDSK ESSQATADHL SASSDSDAET ANYEADEPDA  300
KRRNIEVRVT ESTSSHRTVT EPRIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPYPRSYYK  360
CTTQGCNVRK HVERAATDPK AVITTYKGKH NHDVPASKNS SHNTANGSLD RISTQQPIVQ  420
LRLKEERII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-43189396878Probable WRKY transcription factor 4
2lex_A7e-43189396878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037131
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021685222.11e-156probable WRKY transcription factor 3
SwissprotQ9ZQ701e-140WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2C9WIN71e-152A0A2C9WIN7_MANES; Uncharacterized protein
STRINGLus100371310.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-126WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]