PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037106
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 181aa    MW: 20696.3 Da    PI: 8.3058
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037106genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.21.3e-2271482128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdke 91 
                  ++G+rF+P+d+elv  yL + + + +       + ++ i e+d+y+  ePw+ + + + +e+e++fF+k++kk++ +gkr +r+  + +W+++ ++  
  Lus10037106   7 AVGYRFKPSDQELVLTYLYPLAIRATvnpnhpPPPFDGIIECDLYSPdEPWKRHFESEVNESELFFFTKQKKKKNeKGKRVERSFGNFVWRSQKEEPI 104
                  78****************9988777755565534446899*****9769***9977778889******98887763699*****9******9999888 PP

          NAM  92 vlsk..kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                  v+++  +++++g  +++ +        +++++e  +Wvmheyrl
  Lus10037106 105 VYTTdgESTTIGFHRSFSYKvinhgGSSSSSSEAGEWVMHEYRL 148
                  8877666777*********9887643466777899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-234171IPR003441NAC domain
PROSITE profilePS5100527.0146171IPR003441NAC domain
PfamPF023653.7E-168148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKIKNLAVGY RFKPSDQELV LTYLYPLAIR ATVNPNHPPP PFDGIIECDL YSPDEPWKRH  60
FESEVNESEL FFFTKQKKKK NEKGKRVERS FGNFVWRSQK EEPIVYTTDG ESTTIGFHRS  120
FSYKVINHGG SSSSSSEAGE WVMHEYRLGR VLADRCGGGI EDYVICCVRK KEDSKKSSSE  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100371061e-132(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-13NAC domain containing protein 47