PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037095
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 471aa    MW: 52142.1 Da    PI: 8.3419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037095genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023407429123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp C+k+F++   L  H r+H
  Lus10037095 407 HECPFCNKVFKSGQALGGHKRSH 429
                  78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-4635IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.29E-6735No hitNo description
PROSITE profilePS501579.7231037IPR007087Zinc finger, C2H2
SMARTSM003550.261032IPR015880Zinc finger, C2H2-like
PfamPF139127.2E-51032IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PROSITE profilePS501579.51578105IPR007087Zinc finger, C2H2
SMARTSM003550.2378100IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.27E-879100No hitNo description
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
PfamPF139127.1E-780101IPR007087Zinc finger, C2H2
SuperFamilySSF576672.27E-8402429No hitNo description
PfamPF139124.3E-11406429IPR007087Zinc finger, C2H2
SMARTSM003550.0075407429IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723407429IPR007087Zinc finger, C2H2
PROSITE patternPS000280409429IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEAANQKKKF VCSYCNKRYP CGKSLGGHIR IHLKDSSSSY GNEAQAAAGD GYILRENPKK  60
TKKFDVDPNK NNYHGLLKVC KECGKGFQSL KALCGHMACH SRNYSSYDSD EEEDLVMDDD  120
DDRLSDTETS TLSKRRRRSK RMVRYKNIGL YGNGSGGSLS SSMASDLEQE QEEVALCLMM  180
LSKDSGTLKG CFRSYVAAAA AADSYDDNNS VVLEAKMRIK MKNSIYSSSC YDGGDDDDDK  240
DDNFMEMKVA RKKKQHQQRQ VVMSSDGYDS ENSDSSGYFN YGPRKSELSD VSTDEVVVKK  300
VEIDSGFGDS AFNDDKGKKR MSCLMRKEAK DDSFTGGQQQ RTIIQQHQKK KARDDTYESG  360
ENSFETEQTT IPSKKKMVVK SWNNNGRKNP PPVAKGNAAL SKKAKTHECP FCNKVFKSGQ  420
ALGGHKRSHF VGASDHDGNA TLVIKSSAGM IDLNLPAPEE LANPNGFVNW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021640312.11e-95uncharacterized protein LOC110635330
STRINGLus100370950.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-24C2H2-like zinc finger protein