PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037094
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 355aa    MW: 38141.6 Da    PI: 7.3652
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037094genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.22.9e-32180237259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Lus10037094 180 EDGYRWRKYGQKAVKNSPFPRSYYRCTNTKCTVKKRVERSSEDPTTVITTYEGQHCHH 237
                  8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33164238IPR003657WRKY domain
SuperFamilySSF1182905.89E-28171237IPR003657WRKY domain
PROSITE profilePS5081129.677174239IPR003657WRKY domain
SMARTSM007746.6E-38179238IPR003657WRKY domain
PfamPF031064.8E-25180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDDEGKKNCS SNHPDPTSNH HDNFNLIGDS SSCWTSALGS SYFFPGIGER SDSSSILSDF  60
GWSGVQTHPT PPAPLFHSSA EELEIGQTNN LLRSTESSSG LQGSSGGGGG RGEAPSVSNP  120
SVSNPSVSSS SSEDPEKSTG SGGKPPEIPS NKGAGKKKGQ KRIRQPRVAF MTKSEIDHLE  180
DGYRWRKYGQ KAVKNSPFPR SYYRCTNTKC TVKKRVERSS EDPTTVITTY EGQHCHHTVG  240
FPRGAPGAFI GHHHHFHNLA PYGGPGHPMT SPMSSPHLYH PASAGIQFPR GGEGMVMPQQ  300
QVQVGQGRDS DDEQHHRQTD AGAAGEREPS ETRQQHPTDE GLLGDLVPPG MRNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-25170236874Probable WRKY transcription factor 4
2lex_A8e-25170236874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023878458.11e-82probable WRKY transcription factor 57
RefseqXP_023878459.11e-82probable WRKY transcription factor 57
TrEMBLA0A2N9J2U22e-85A0A2N9J2U2_FAGSY; Uncharacterized protein
STRINGLus100370940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108143140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-59WRKY DNA-binding protein 57