PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037055
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 513aa    MW: 56931.5 Da    PI: 5.3981
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037055genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.63.5e-1121355081374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPilkfs 94 
                  lv++L++cAeav+ +d++ a+ lL++l+ +a   g+++qR+a++f+++L+ rl+  +  +++  l +++++      s+e+  al+l +e++P ++f+
  Lus10037055 135 LVQQLIACAEAVACRDKAHASVLLSELRSNALVFGTSFQRVASCFVQGLSDRLTLvQPLGTVGVLGSQANK--VpsfSAEKDEALTLAYELCPQIQFG 230
                  689***************************************************93333444444333333..2346999999999************ PP

         GRAS  95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                  h++aN aIlea+ege+ +H++D++++    +G QW  L+++LasR+   +++p+lRiTgvgs    s+e+l+++g  L  +A +lg++fef   + ++
  Lus10037055 231 HFVANTAILEALEGESSIHVVDLGMTlglpYGQQWQQLMHSLASRStrnKPAPRLRITGVGS----SAERLQAIGFELDCYAGSLGLSFEFMY-IKSS 323
                  **********************99873333678**********9998878999*********....9**************************.799* PP

         GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                  le+l++e+++v++gE+++ n+vlq+h +++es    +   +vL+++++lsPk +v+veq+++hn++ Fl rf+e+l+yysa+fdsl++ lp+ +  r+
  Lus10037055 324 LESLKPEHFDVQEGESVVLNSVLQMHCVVKESRGALN---SVLQVLNELSPKAFVLVEQDSNHNGPFFLGRFMESLHYYSAVFDSLDSMLPKYDTRRA 418
                  *****************************88877777...8********************************************************* PP

         GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  k+E+++++ ei+n+v+ceg++r+erhe++ +Wr+r+++aGF++ pl+  +++q+k  + k k  dgy+v+ee+g+l+lgW++rp++++S+W+
  Lus10037055 419 KIEQFYFADEIKNIVSCEGSARVERHERADQWRRRMSRAGFQASPLK--MVAQVKQWMGKAKfCDGYSVNEEKGCLILGWQSRPVIAASCWK 508
                  **********************************************7..678999999999999***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.015109489IPR005202Transcription factor GRAS
PfamPF035141.2E-109135508IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MVVASDRFLS ADFSSNEGSV INSSDLDLNL CQFPYYPAFQ EKRTADYTFD EPKRQKRQKN  60
EAGASSNDGS CVSDSNSSFN SLPKLQFRDY VWAYAERFLA IEAMEEAAAT LTVVGEEEVR  120
IEDVKEETGV DGMKLVQQLI ACAEAVACRD KAHASVLLSE LRSNALVFGT SFQRVASCFV  180
QGLSDRLTLV QPLGTVGVLG SQANKVPSFS AEKDEALTLA YELCPQIQFG HFVANTAILE  240
ALEGESSIHV VDLGMTLGLP YGQQWQQLMH SLASRSTRNK PAPRLRITGV GSSAERLQAI  300
GFELDCYAGS LGLSFEFMYI KSSLESLKPE HFDVQEGESV VLNSVLQMHC VVKESRGALN  360
SVLQVLNELS PKAFVLVEQD SNHNGPFFLG RFMESLHYYS AVFDSLDSML PKYDTRRAKI  420
EQFYFADEIK NIVSCEGSAR VERHERADQW RRRMSRAGFQ ASPLKMVAQV KQWMGKAKFC  480
DGYSVNEEKG CLILGWQSRP VIAASCWKCS KI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-591165074378Protein SCARECROW
5b3h_A3e-591165073377Protein SCARECROW
5b3h_D3e-591165073377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085888.10.0DELLA protein RGL1
TrEMBLA0A067K4N60.0A0A067K4N6_JATCU; GRAS33 protein
STRINGLus100370550.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-81RGA-like 1