PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036959 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 182aa MW: 20631.3 Da PI: 8.4492 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.4 | 1.6e-24 | 7 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 ++G+rF+P+d+el+ yL + + + + + ++ i e+d+y+ ePw+ + k + +e+e+yfF+kr+kk+++gkr +r+ + +Wk++ ++ v Lus10036959 7 AVGYRFKPSDQELILTYLYPLAIRATvnpnhpPPPFDGIIECDLYSPdEPWKRHFKDEVNESELYFFTKRKKKNEKGKRVERSFGNCVWKSQKEEPIV 104 78****************9988777755565534446899*****9769***9866667889*****************************9998888 PP NAM 93 lsk..kgelvglkktLvfy.......kgrapkgektdWvmheyrl 128 +s+ +++++g +++ + + +++++e +Wvmheyrl Lus10036959 105 YSTdgESTTIGFDRSFSYKvinhgggSSSSSSSEAGEWVMHEYRL 149 888766777*********988877655677777899*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-26 | 4 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.717 | 6 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-17 | 8 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MKIKNLAVGY RFKPSDQELI LTYLYPLAIR ATVNPNHPPP PFDGIIECDL YSPDEPWKRH 60 FKDEVNESEL YFFTKRKKKN EKGKRVERSF GNCVWKSQKE EPIVYSTDGE STTIGFDRSF 120 SYKVINHGGG SSSSSSSEAG EWVMHEYRLG RVLADRCGGG IEDYVICCVR KKEGSKKSSS 180 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-15 | 5 | 177 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-15 | 5 | 177 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-15 | 5 | 177 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-15 | 5 | 177 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-15 | 5 | 177 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-15 | 5 | 177 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-15 | 5 | 177 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-15 | 5 | 177 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-15 | 5 | 177 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-15 | 5 | 177 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-15 | 5 | 177 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-15 | 5 | 177 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-15 | 5 | 177 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-15 | 5 | 177 | 16 | 170 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036959 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10036959 | 1e-132 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 1e-12 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Lus10036959 |