PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036955
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 149aa    MW: 16923.5 Da    PI: 10.0643
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036955genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.83.1e-177108295
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkklelee......vikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdke 91 
                  ++G+rF+P+d+el+  yL + + + +++l++       i e+d+y+  ePw+ + k + +e+e+yfF+k++kk++ +gkr  r+  + +Wk++ ++  
  Lus10036955   7 AVGYRFKPSDQELILTYLYPLAIRATVNLNHppppfdGIIECDLYSPdEPWKRHFKDEVNESELYFFTKQKKKKNeKGKRVDRSFGNCMWKSQKEEPI 104
                  78*****************998888844433444443799*****9759***9866667889******9988776369*************9988776 PP

          NAM  92 vlsk 95 
                  v+s+
  Lus10036955 105 VYST 108
                  6664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-144109IPR003441NAC domain
PROSITE profilePS5100514.6096148IPR003441NAC domain
PfamPF023656.8E-98103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MKIKNLAVGY RFKPSDQELI LTYLYPLAIR ATVNLNHPPP PFDGIIECDL YSPDEPWKRH  60
FKDEVNESEL YFFTKQKKKK NEKGKRVDRS FGNCMWKSQK EEPIVYSTDG TPPTASPPPS  120
VSIGLSLTRS SITVVVRVRV LLRRLGNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036955
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100369551e-106(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-06NAC domain containing protein 47