PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036932
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 512aa    MW: 56840.7 Da    PI: 5.3915
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036932genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.81.2e-1111345071374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPilkfs 94 
                  lv++L++cAeav+ +d++ a+ lL++l+ +a   g+++qR+a++f+++L+ rl+  +  +++  l +++++       +e+  al l +e++P ++f+
  Lus10036932 134 LVQQLIACAEAVACRDKAHASVLLSELRSNALVFGTSFQRVASCFVQGLSDRLTLvQPLGTVGVLGSQANK--VpsfLAEKDEALMLAYELCPQIQFG 229
                  689***************************************************93333444444333333..22468888899999*********** PP

         GRAS  95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                  h++aN aIlea+ege+ +H++D++++    +G QW  L+++LasR+   +++p+lRiTgvgs    s+e+l+++g  L  +A +lg++fef   + ++
  Lus10036932 230 HFVANTAILEALEGESSIHVVDLGMTlglpYGQQWQQLMHSLASRStrnKPAPRLRITGVGS----SAERLQAIGFELDCYAGSLGLSFEFMY-IKSS 322
                  **********************99873333678**********9998878999*********....9**************************.799* PP

         GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                  le+l++e+++v++gE+++ n+vlq+h +++es    +   +vL+++++lsPk +v+veq+++hn++ Fl rf+e+l+yysa+fdsl++ lp+ +  r+
  Lus10036932 323 LESLKPEHFDVQEGESVVLNSVLQMHCVVKESRGALN---SVLQVLNELSPKAFVLVEQDSNHNGPFFLGRFMESLHYYSAIFDSLDSMLPKYDTRRA 417
                  *****************************88877777...8********************************************************* PP

         GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  k+E+++++ ei+n+v+ceg++r+erhe++ +Wr+r+++aGF++ pl+  +++q+k  + k k  dgy+v+ee+g+l+lgW++rp++++S+W+
  Lus10036932 418 KIEQFYFADEIKNIVSCEGSARVERHERADQWRRRMSRAGFQASPLK--MVAQVKQWMGKAKfCDGYSVNEEKGCLILGWQSRPVIAASCWK 507
                  **********************************************7..678999999999999***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.46108488IPR005202Transcription factor GRAS
PfamPF035144.2E-109134507IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MVVASDPFLS ADFSSNEGSV INSSDLDLNL CQFPYYPAFQ EKRTADYTFD EPKRQKRLKN  60
EIGASSNDGS CVSDSNSSFN SLPKLQFRDY VWAYAERFLA IEAMEEAAAT LTVVGEEVRI  120
EDVKEETGVD GMKLVQQLIA CAEAVACRDK AHASVLLSEL RSNALVFGTS FQRVASCFVQ  180
GLSDRLTLVQ PLGTVGVLGS QANKVPSFLA EKDEALMLAY ELCPQIQFGH FVANTAILEA  240
LEGESSIHVV DLGMTLGLPY GQQWQQLMHS LASRSTRNKP APRLRITGVG SSAERLQAIG  300
FELDCYAGSL GLSFEFMYIK SSLESLKPEH FDVQEGESVV LNSVLQMHCV VKESRGALNS  360
VLQVLNELSP KAFVLVEQDS NHNGPFFLGR FMESLHYYSA IFDSLDSMLP KYDTRRAKIE  420
QFYFADEIKN IVSCEGSARV ERHERADQWR RRMSRAGFQA SPLKMVAQVK QWMGKAKFCD  480
GYSVNEEKGC LILGWQSRPV IAASCWKCSK I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-581165065378Protein SCARECROW
5b3h_A1e-581165064377Protein SCARECROW
5b3h_D1e-581165064377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036932
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085888.10.0DELLA protein RGL1
TrEMBLA0A067K4N60.0A0A067K4N6_JATCU; GRAS33 protein
STRINGLus100369320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-81RGA-like 1