PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036891
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 351aa    MW: 38066.5 Da    PI: 7.3654
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036891genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32174231259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Lus10036891 174 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTTVITTYEGQHCHH 231
                  8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-33158232IPR003657WRKY domain
SuperFamilySSF1182907.19E-28165231IPR003657WRKY domain
PROSITE profilePS5081129.746168233IPR003657WRKY domain
SMARTSM007741.4E-37173232IPR003657WRKY domain
PfamPF031063.6E-25174231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDDEGNNNSS SNHPDPTANH HDNFNLIGDS SCWTSALGSS YLFFPGIGER SDSSSILSDF  60
GWSGAHPHPP LFHSSTEELE IGQTNNLLCS TESSSGLQGS SGGGRGEAPS VSNPSVSNPS  120
VSSSSSEDPE KSTGSGGKPP EIPSNKGAGK KKGQKRIRQP RFAFVTKSEI DHLEDGYRWR  180
KYGQKAVKNS PFPRSYYRCT NSKCTVKKRV ERSSEDPTTV ITTYEGQHCH HTVGFPRGAG  240
TFIGHHHHFH DLAPPYGPPM TSSMSSPHLY HPASAGIHRG GSGDAMMMTQ QPPRQPHQVQ  300
VEQGSESDDD RRDGRGVGER EPGETRQKHR RFPTDEGLLG DLVPPGMRNR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-251662301074Probable WRKY transcription factor 4
2lex_A7e-251662301074Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036891
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274549.17e-83PREDICTED: probable WRKY transcription factor 57
TrEMBLA0A2N9J2U24e-82A0A2N9J2U2_FAGSY; Uncharacterized protein
STRINGLus100368910.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108143140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.29e-63WRKY DNA-binding protein 57