PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 430aa MW: 46990.2 Da PI: 9.2324 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.1 | 3.2e-32 | 189 | 245 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK+vkgse prsYY+Ct+ +Cpv+kkvers +++v+ei+Y+g+Hnh+ Lus10036800 189 DDGYKWRKYGQKQVKGSELPRSYYKCTHLKCPVTKKVERSL-EGQVTEIIYKGQHNHH 245 8****************************************.***************7 PP | |||||||
2 | WRKY | 107.1 | 8.6e-34 | 335 | 393 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+ Lus10036800 335 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERAATDPKAVITTYEGKHNHD 393 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-28 | 183 | 247 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-25 | 186 | 247 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-35 | 188 | 246 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.217 | 189 | 247 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 189 | 245 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-37 | 320 | 395 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-30 | 327 | 395 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.928 | 330 | 395 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 335 | 394 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-26 | 336 | 393 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MAENEGRRRG PAAPAAAERT TVVPSSRPTT IALPPRSFGG DSTVFSGGGF GFSPGPMSLV 60 SSFFSDGEDN KSFSQLLAGV MSPVAVPSTK GEKGSANLSV APAPPAASMF MDPPAISPAT 120 LLESPEFRMF YPQESYGMSN QQALALVPAS ALPHHETTKD NYSKSTKMET YPDQGYQSSS 180 FIVVDKPADD GYKWRKYGQK QVKGSELPRS YYKCTHLKCP VTKKVERSLE GQVTEIIYKG 240 QHNHHPPQSN KRGKDQGNNV ELGSQFRDSK ESSQATADRL SASSDSDAET ANYEAEEPDA 300 KRRNIEVRVT DSTSSHRTVT EPRIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPYPRSYYK 360 CTTQGCNVRK HVERAATDPK AVITTYEGKH NHDVPASKNS SHSSTANSSL DKLSTQQPVV 420 QLRLKERIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-43 | 189 | 396 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-43 | 189 | 396 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036800 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021685222.1 | 1e-156 | probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-137 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A2C9WIN7 | 1e-150 | A0A2C9WIN7_MANES; Uncharacterized protein | ||||
STRING | Lus10036800 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-119 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Lus10036800 |
Publications ? help Back to Top | |||
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