PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10036760

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 329aa MW: 34927.7 Da PI: 9.4574

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10036760	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	105.7	2.5e-33	1	49	14	62
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++s Lus10036760 1 METKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKATS 49 68********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	24.288	1	47	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.3E-26	1	47	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-21	1	46	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
METKFCYYNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKNKATSS TAVSQQQQQY 60 NQIIVSEALR SAHHQSHVMN GGGTTVLSFR SDSPLCESVA SILNISESAQ AGFQPRRGTT 120 GNVDDCSGGF SGSNSSDKVV NNCQGFSWPF AVPPPGFCPP GYPISFYPAP VPPPYWGCAA 180 VPALPWNGAQ CVAPLSPKAA SSTSSSPATS PLGKHSRDGG EFARSDDGGL SEEPPLRKMS 240 NGSSSSDRRV VVPKTLRIDD PNDAAKSSIW ATLGISNSAN PSSNKGGDHM FQGFQSKGGN 300 RVPRSGASLM LQANPAAMSR SLNFRENN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10036760

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024465104.1	5e-97	cyclic dof factor 3
TrEMBL	A0A2K1YVC8	1e-95	A0A2K1YVC8_POPTR; Uncharacterized protein
STRING	Lus10036760	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-56	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Lus10036760