PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 219aa MW: 23414.3 Da PI: 8.8643 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.6 | 5.3e-32 | 73 | 130 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 + YkeClkNhAa++Gg a+DGCgEf ps++++ ++++lkCaACgCHRnFHRre+++ Lus10036753 73 VCSYKECLKNHAATMGGLALDGCGEFFPSPNSSpLDPTSLKCAACGCHRNFHRREPSS 130 579**************************999999********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.3E-26 | 75 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.5E-29 | 76 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.03 | 76 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-20 | 76 | 132 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDLTPAAPPT STTSPLPISS SINPLISKSP NSPSGTDNNP NLLPTHLHKS LSLSNGVRRR 60 LHHHPQEPPT MVVCSYKECL KNHAATMGGL ALDGCGEFFP SPNSSPLDPT SLKCAACGCH 120 RNFHRREPSS SAVVHHHYHP LPAIQWTNHN NNSSSPSTSP SPSSPAASPT PHHSIYPPPP 180 PSSAPHMLLE HAPPLKQNDP PPPAAAVPQR RRSWRAEF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036753 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612133.1 | 2e-42 | zinc-finger homeodomain protein 11-like | ||||
TrEMBL | A0A2C9VUZ0 | 4e-41 | A0A2C9VUZ0_MANES; Uncharacterized protein | ||||
STRING | Lus10036753 | 1e-152 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 5e-30 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Lus10036753 |