PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036725
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 482aa    MW: 52539.5 Da    PI: 7.0545
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036725genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.7e-29199258159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+ +d +v+++tYeg Hnh+
  Lus10036725 199 MKDGCQWRKYGQKIAKGNPCPRAYYRCTLSpTCPVRKQVQRCVDDMTVLITTYEGAHNHP 258
                  58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-31184260IPR003657WRKY domain
SuperFamilySSF1182901.07E-26192260IPR003657WRKY domain
PROSITE profilePS5081128.162194260IPR003657WRKY domain
SMARTSM007746.7E-35199259IPR003657WRKY domain
PfamPF031069.2E-26200258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEEEMIRLAE AEMGSVKEEN ERLKQLLSKM VNDYHSLRTH FLKIRGDDQH DRTAPKPDPE  60
AEEEEEEESD EQLFSLRLGR SSRELPKKIV KVDPTATKKR KLEGGLSLGL VDYSEVAAAA  120
ANNNNSNSGS EEEEETAVVA AEAWPPSKVL KTMRNNSNNN NSNSSSSDDR EDQLQQPLLQ  180
PPLKKTRVSI RARVDTPTMK DGCQWRKYGQ KIAKGNPCPR AYYRCTLSPT CPVRKQVQRC  240
VDDMTVLITT YEGAHNHPLP YSATAMASTI AAAASMLQSC SSSSSLPLST ISAPSQTTTT  300
PQNLPNHHFY FPNSSISTCN SHPTITLDLT TPSASASLAA MNARSSIPPP STYSSSNTLD  360
FSRSTSTMLP CNASNPMMGY LFPKQPLPQP HLGQQGDYLY GGRHYQHVSD GTRLTTGGSS  420
AEMTIAAQAA TKVVTSNPSF RSALAAAITS FVGKGDHHHG EQHQTSSFTL FQGSINKKES  480
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-201992601777Probable WRKY transcription factor 4
2lex_A2e-201992601777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036725
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100367250.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-48WRKY DNA-binding protein 72