PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036575
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 173aa    MW: 19427.7 Da    PI: 5.359
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036575genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB167.12.1e-5238131497
        NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  qdr+lPianv+r+mk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dy  plk yl +yrelege+
  Lus10036575  38 QDRMLPIANVGRMMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWALSSLGFDDYCSPLKRYLLRYRELEGER 131
                  9******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.1E-5233159IPR009072Histone-fold
SuperFamilySSF471131.93E-3938157IPR009072Histone-fold
PfamPF008086.6E-2741105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-176987No hitNo description
PROSITE patternPS0068507288IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-1788106No hitNo description
PRINTSPR006151.7E-17107125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVDNYFARAS STTRDNTFPL DDFSVEAEAI STSSAGPQDR MLPIANVGRM MKQILPPNAK  60
ISKEAKETMQ ECVSEFISFV TGEASDKCHK EKRKTVNGDD VCWALSSLGF DDYCSPLKRY  120
LLRYRELEGE RAARSDYNTP PSGSGIKRTA QQQEEEEEEV LVHHQRHSKI CN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4138126492Transcription factor HapC (Eurofung)
4g92_B3e-4138126492Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036575
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086005.11e-62nuclear transcription factor Y subunit B-1-like
SwissprotO822484e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2P5FFR98e-64A0A2P5FFR9_TREOI; Nuclear transcription factor Y subunit B
STRINGLus100365751e-128(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-50nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]