PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036573 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 529aa MW: 60721.2 Da PI: 9.0382 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 14 | 36 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Lus10036573 14 FVCEICNKGFQRDQNLQLHRRGH 36 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.5 | 4.8e-05 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Lus10036573 90 WKCDKCSKKYAVQSDWKAHQKTC 112 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.0E-8 | 13 | 36 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 13 | 36 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 14 | 36 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 14 | 36 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.5E-5 | 14 | 36 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 16 | 36 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 98 | 55 | 85 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.1E-5 | 78 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.0E-8 | 85 | 111 | No hit | No description |
SMART | SM00355 | 94 | 90 | 110 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTTTEV RKRVYICPEP 60 TCVHHNPARA LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VQSDWKAHQK TCGTREYKCD 120 CGTIFSRRDS FITHRAFCDA LAEENNKVNQ QGLMSNNNNN NQMADLMSPN SSSAAGDFNA 180 SFDPKNPLKS LPQDLIPMPF KPMNMGAAGG MFSTSSGTLF GGPRGGGNNG GMPTSXXXXX 240 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 360 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 420 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXAAA TENGWRRDDE 480 SLSAAAAATV AWGIGCWVGE AYLGCLIFYI RFLISVWFFW VYDYDDFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-33 | 86 | 158 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 1e-33 | 86 | 158 | 3 | 72 | Zinc finger protein JACKDAW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036573 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10036573 | 1e-152 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 3e-84 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10036573 |