PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 26770.7 Da PI: 5.9899 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.6e-13 | 114 | 158 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E++l++ + ++G+g+W++I+r + Rt+ q+ s+ qky Lus10036413 114 PWTEAEHKLFLIGLSKYGKGDWRSISRNIVVSRTPTQVASHAQKY 158 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 5.991 | 5 | 58 | IPR017884 | SANT domain |
SMART | SM00717 | 9.0E-8 | 6 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.65E-13 | 8 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.63E-6 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 20.088 | 107 | 163 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.64E-16 | 108 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.5E-17 | 110 | 162 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.8E-10 | 111 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-10 | 111 | 161 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-11 | 114 | 158 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.82E-8 | 114 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MYQEPYSDHW TRSDDKKFEQ ALVFFPEDSP GRWLNIAHHM GRPVAQVMEH YNLLLRDVYE 60 IDSGRVELPT YLDDDVDNWR SSAAVEEEED SGQISFSGGK TTKHGETERK KGTPWTEAEH 120 KLFLIGLSKY GKGDWRSISR NIVVSRTPTQ VASHAQKYFL RQSSVKKERK RSSIHDITNV 180 DMNALSPCSL QGQNQMQQQQ QEEEISALAS SYLPDHHQQE GYLMGFNSSG FPM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036413 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622270.1 | 1e-81 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | A0A3P6AJ62 | 6e-82 | A0A3P6AJ62_BRAOL; Uncharacterized protein | ||||
STRING | Lus10036413 | 1e-176 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 6e-77 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10036413 |