PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036399 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 26897.3 Da PI: 10.7636 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.8e-30 | 166 | 224 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ C+++k+ver+++dp ++++tY+ eHnh+ Lus10036399 166 SDVWAWRKYGQKPIKGSPYPRGYYRCSTSkACMARKQVERNRSDPGMFIVTYTAEHNHP 224 79************************99889***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-30 | 155 | 226 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.521 | 160 | 226 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-26 | 163 | 226 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-35 | 165 | 225 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-25 | 167 | 224 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MADDWDLLAV VRGCTATSTS HSSTTTAAAS TCCNSQSTVT SSSSPTSSFR LDFGSQSFPS 60 PGLDQVSRFF RRDPIGDQLH ELYKPFFSRS NPPLPLPSQN ASTLVSTISP PSPFAVDRAP 120 ITPPPLFRNQ QLLKRPLPSP SAASRSKRRK NQVKKVCQVP AEALSSDVWA WRKYGQKPIK 180 GSPYPRGYYR CSTSKACMAR KQVERNRSDP GMFIVTYTAE HNHPAPTHRN SLAATSRPKG 240 SHHPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-23 | 150 | 227 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-23 | 150 | 227 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036399 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002511920.1 | 2e-72 | WRKY transcription factor 22 | ||||
Swissprot | O04609 | 3e-65 | WRK22_ARATH; WRKY transcription factor 22 | ||||
TrEMBL | B9RDY1 | 4e-71 | B9RDY1_RICCO; WRKY transcription factor, putative | ||||
STRING | Lus10036399 | 1e-179 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4205 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-53 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10036399 |