PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036329
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 421aa    MW: 46085.3 Da    PI: 8.1573
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036329genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.63e-172659134
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                 C  C+tt+Tp+WR gp g++tLCnaCG++yrk +
  Lus10036329 26 CIDCHTTTTPCWRGGPAGPRTLCNACGIRYRKSR 59
                 889*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-162071IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-132359No hitNo description
PROSITE profilePS5011412.362456IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-132459IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.91E-142557No hitNo description
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
PfamPF003207.1E-152659IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
METESTSSPF ICRQQADQMM IRIRSCIDCH TTTTPCWRGG PAGPRTLCNA CGIRYRKSRN  60
AAAAASSSSP SSSSSSGSVK KKRKTMIGKG KEAGAVPVKK LLGLMGLDSW KRKKQQWGEV  120
ELAAVLLMSL SESNLPFPNK ICLDWTRSQL IQLTCSGPNE MIPSRLLNAG RLLMFKAPFR  180
FSPAPNLTRG FASNTGGRTA DPSVFSDERD REVQPAVPSG QPEETRDHYE PDNSKREAEE  240
PEHRPDSETD PLSPPKPPHS SSSRLESVGV HNPAHPQSQQ KRGYTSASPN RTENNNNYNS  300
VKDVSCAGLD GSPWPADEEQ RSKAGDAADE DDKEYFKHHK ASPLSEIEFA DTRKPVTRAT  360
DGTADSASAY PDVVGWSPEQ AVGAEETMAR ASRMFWERAA RGDPDTPHGR VLRSLRPEMF  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036329
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672816.19e-80uncharacterized protein LOC110659251
TrEMBLA0A059AY793e-76A0A059AY79_EUCGR; Uncharacterized protein
STRINGLus100363290.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1271222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-15GATA transcription factor 16