PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036268
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 547aa    MW: 59372.3 Da    PI: 5.8932
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036268genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.41.9e-25239295259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+++g H h+
  Lus10036268 239 PDGYNWRKYGQKQVKSPNGSRSYYRCTHSDCCAKK-IECSDQSGHVIEIVNKGLHSHD 295
                  5********************************98.*********************7 PP
2WRKY932.3e-29412468359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dgy+WrKYGqK+vkg+ +pr+YYrCtsagCpv+k++e++a + ++v+ tY+g H+h+
  Lus10036268 412 DGYRWRKYGQKMVKGNAHPRNYYRCTSAGCPVRKHIETEAGNSSAVILTYKGIHDHD 468
                  9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-19235297IPR003657WRKY domain
SuperFamilySSF1182906.67E-20236297IPR003657WRKY domain
SMARTSM007746.2E-23238296IPR003657WRKY domain
PfamPF031061.3E-16240294IPR003657WRKY domain
PROSITE profilePS5081116.685240297IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-30395470IPR003657WRKY domain
SuperFamilySSF1182903.66E-26403470IPR003657WRKY domain
PROSITE profilePS5081130.251405470IPR003657WRKY domain
SMARTSM007747.8E-33410469IPR003657WRKY domain
PfamPF031063.2E-22412467IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MAESERLDVP QPQQNDEPKQ VSTDQVDVIF DGDGEESDAV VVDNDSGGGE EVDDENDKDE  60
MQPELRRLTP ELDSAEPLSS MPHEKPGNLD LAASAVVSEN DQCIGELSGG YDLLQELIWK  120
VIAHDLPGSL GNSTLETRTE AGFKDLVGLS QQEVPVCISP KNAKAEADNQ LQLWVCPAPL  180
SGLSPTSVTQ LISSAPDPTV PEQRVPLSKG STLTMQEANQ QTPSHIRKLT MPVLKTPIPD  240
GYNWRKYGQK QVKSPNGSRS YYRCTHSDCC AKKIECSDQS GHVIEIVNKG LHSHDLPQKS  300
NSKRESRVAT SGRPIPSSII AEHSDLLRES NPALLSEQPK QQKTIVADGN RLDSSASDET  360
NAAQTNEEHI CEPETKKRLK KDNLDCPEAL FKPGKKSKFV VHAAVDVGIS GDGYRWRKYG  420
QKMVKGNAHP RNYYRCTSAG CPVRKHIETE AGNSSAVILT YKGIHDHDMP VPKKRHGPPS  480
ASLVAAAAAA GSMNAVQQQK SSMKWPARKE GEITSQTTPD AGGGDKDKAI ESARTLLSIG  540
FQIKPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-25397470174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036268
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690058.11e-171probable WRKY transcription factor 32
TrEMBLA0A2K1WZ371e-163A0A2K1WZ37_POPTR; Uncharacterized protein
STRINGLus100362680.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-119WRKY DNA-binding protein 32