PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036132
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 327aa    MW: 35092.2 Da    PI: 7.8517
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036132genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof96.12.6e-302985261
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 +e+alkcprC+stntkfCyynnysl+qPryfCk+CrryWtk   +r vP Ggg+rk+ ++
  Lus10036132 29 PEQALKCPRCESTNTKFCYYNNYSLTQPRYFCKSCRRYWTK---VRTVPGGGGCRKSTTK 85
                 6899************************************8...8***********9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.1E-263184IPR003851Zinc finger, Dof-type
PROSITE profilePS5088423.163384IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-183379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAESMVTSST HNRNNIQSAG KAAKAAQPPE QALKCPRCES TNTKFCYYNN YSLTQPRYFC  60
KSCRRYWTKV RTVPGGGGCR KSTTKRSSSS GRRMTTTGAD QDSQLSMPIM PLTGFLTSSA  120
YDSNDLSLAF ARLQKQQYQI GFDEDTTIAT NTPTSTSTST PPGFLEALRS SFLHTAGPNG  180
NFSYNYGDDD QGYSGNNNNN NNNGIMSFQN DQMMGIHKEE YLEESSNSAN TNGKGMLWGL  240
LPPNWQMMNY NYGLNQHQYG TITTTTTTDH HHETAGSNAN EGSGGWWNSG NINAAGGGGG  300
GLGGGSAANW HNAATGGGLV NTSALM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036132
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214603.16e-51dof zinc finger protein DOF2.1
TrEMBLA0A0K8K6355e-49A0A0K8K635_CAJCA; Dof protein
TrEMBLA0A151TN621e-49A0A151TN62_CAJCA; Dof zinc finger protein DOF2.1 (Fragment)
STRINGLus100361320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.13e-28TARGET OF MONOPTEROS 6