PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NF-YC | ||||||||
Protein Properties | Length: 250aa MW: 27381.9 Da PI: 10.2999 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 34.8 | 3.6e-11 | 139 | 229 | 11 | 98 |
NF-YC 11 ekatdfknhelPlarikkilkad.edvkm..isaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++d ++P+ari++i+ ++ ++++ ++ ++ +a elf+ +++ + a + +++tl +a++v++++ fdfl d vp Lus10036110 139 NQVNDGTMCRFPMARIRRIMTSEtPNLQTglEGQDVVFVVNRATELFLEKFAEQGHRSAVNDRKKTLDYKHLATVVSQSKEFDFLSDFVPL 229 5667777889**********99734554311456788899************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 3.9E-11 | 148 | 214 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.3E-19 | 149 | 228 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.38E-14 | 170 | 228 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MASSKSSKKE EDNKMQKNGK ALGISKSLTK GKKSSLASKS KSKSSQKKTT PVKATNKAKT 60 PTKPKKEENS KKKKEPEPEP EPEELVVPSS SCDSEAGGGE ARVDEAKGRS RNSMSSKAEN 120 GKMKKQNVRD EINGDEDGNQ VNDGTMCRFP MARIRRIMTS ETPNLQTGLE GQDVVFVVNR 180 ATELFLEKFA EQGHRSAVND RKKTLDYKHL ATVVSQSKEF DFLSDFVPLK VKASDALEAI 240 KSAEKQQQG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036110 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU829499 | 1e-119 | EU829499.1 Linum usitatissimum clone LU0025C09 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609413.1 | 5e-43 | protein FAM133B | ||||
TrEMBL | A0A2C9VZ11 | 1e-41 | A0A2C9VZ11_MANES; Uncharacterized protein | ||||
STRING | Lus10036110 | 1e-180 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 6e-29 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Lus10036110 |