PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036045
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 341aa    MW: 38891.3 Da    PI: 8.3792
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036045genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.3e-1532120899
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + + + + l++p+kf++++g+k  +s tl+      g +Wev+l  + k++  +  +GW++F++   Lk g f++F+++++s+f   v ++++
  Lus10036045  32 HTAIRDKKLMIPRKFISSYGSKVWRSATLQ--VpVGGDKWEVELVTDDKKRVWFCNDGWQRFAEFYSLKHGHFLLFEYKDDSTF--SVVICDT 120
                  34556677***********99999985555..52588*******99888888999***********************998999..8988886 PP
2B349.38.9e-16245338198
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  ff++ +++ + ++  + +p +fa++    +g    + +l+      + W+v l   ++++ + +++GWk+Fv++n Lk gD+++F+l+++  + +++v
  Lus10036045 245 FFTIRITPTYARQYFVHIPLRFASQQrafQG----E-KLVELEVGDKAWTVDL---QCRRYVKFARGWKSFVEDNSLKCGDVCTFELIKElPSVSMKV 334
                  788899999999999********88864322....2.333344577*******...55556889************************9999999999 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++ r
  Lus10036045 335 TITR 338
                  8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-1923119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1824120IPR015300DNA-binding pseudobarrel domain
CDDcd100178.48E-1625119No hitNo description
PROSITE profilePS5086312.44925121IPR003340B3 DNA binding domain
SMARTSM010192.5E-1626121IPR003340B3 DNA binding domain
PfamPF023625.3E-1333120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-18238338IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-17239337IPR015300DNA-binding pseudobarrel domain
CDDcd100176.97E-15244338No hitNo description
PROSITE profilePS5086312.943245340IPR003340B3 DNA binding domain
PfamPF023624.6E-13245338IPR003340B3 DNA binding domain
SMARTSM010193.1E-8245336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MASLGKPRHG NGNESSLNQQ EAITRFFKII LHTAIRDKKL MIPRKFISSY GSKVWRSATL  60
QVPVGGDKWE VELVTDDKKR VWFCNDGWQR FAEFYSLKHG HFLLFEYKDD STFSVVICDT  120
TATEIQYPVT TKANEAAAQP PKVKEEDGVS KEKEQSPIVA PTDDAKGKSP MEVPPTDDVA  180
QVRQMKRQRC NLNWEWNPCS AVKHEEKEGS NLGENDASPG KPKSCWKREL SPVAKEEELT  240
SEKPFFTIRI TPTYARQYFV HIPLRFASQQ RAFQGEKLVE LEVGDKAWTV DLQCRRYVKF  300
ARGWKSFVED NSLKCGDVCT FELIKELPSV SMKVTITRDV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100360450.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-28B3 family protein