PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036032
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 257aa    MW: 27552 Da    PI: 8.3368
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036032genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702212.21.2e-65792433153
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaa.asaaeaaskrkrel.kskkqsalsstklssaeskk 98 
                  s ta+CqdCGnqakkdC h+RCRtCCksrgfdCathvkstWvp+a+rrerq ++aa++     +sa+++  k++r   +++++++ s+t++s++++++
  Lus10036032  79 SSTATCQDCGNQAKKDCPHRRCRTCCKSRGFDCATHVKSTWVPSARRRERQLMTAATAGGGGcSSASTSGVKKPRLIgSQTTATTNSHTSTSNTTPSR 176
                  67899*********************************************999888776655145578888999988555667777889999999999 PP

       DUF702  99 eletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                  + +t+s            lP +v+++avf+cvrv++v+dge+e+aYq+av+igGh+fkG+LydqG+e
  Lus10036032 177 SYDTTSshhhqdagfretLPGQVRAAAVFKCVRVTAVEDGEDEYAYQAAVKIGGHLFKGVLYDQGVE 243
                  99998899*********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.4E-6081243IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.9E-2783125IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-28195242IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEGGDDDNHH NLFQRKIGSS SSSGIQFWQH YNNSIKKNNP PSSSILDPNN NTNNNNNNNN  60
NLPQSTGVVM NSMMATSSSS TATCQDCGNQ AKKDCPHRRC RTCCKSRGFD CATHVKSTWV  120
PSARRRERQL MTAATAGGGG CSSASTSGVK KPRLIGSQTT ATTNSHTSTS NTTPSRSYDT  180
TSSHHHQDAG FRETLPGQVR AAAVFKCVRV TAVEDGEDEY AYQAAVKIGG HLFKGVLYDQ  240
GVEGRGADGN FPDDEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036032
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019434791.15e-90PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK94e-67LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A4P1RRK41e-88A0A4P1RRK4_LUPAN; Uncharacterized protein
STRINGLus100360320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-61Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]