PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10035994

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 313aa MW: 33105.9 Da PI: 4.8702

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10035994	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	188	209	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k F+++ H+r+H Lus10035994 188 VCQTCHKLFRSWKAVFGHMRMH 209 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	189	209	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MHTWFLFIFC VLFLCFPPPA VIVMPKTNTH PSSSSEDDTN SAPTSPRLSP AAIAAAEAAT 60 SALNLERSGE QQGTVAPVSQ AATVATTTVP PPPPPPAARG PHGVGVRISI SEAGEGSIRW 120 RPSASSVWSA PAAIPPTTAN PLPMSPNSIT TATALLEQAF QQPPPPPQEP TSNKRQRGEM 180 DVPSGPPVCQ TCHKLFRSWK AVFGHMRMHK ERTYRGAFPP PVSSDGCSSS NTIAATTPPR 240 RRGLEIDLNI QFNPDEDIDV HDQQEDQALT TPPPPPPALE PASIDLNEPA AANKSDEKEG 300 DGSTSNNDES NE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10035994

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10035994	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10202	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35610.1	8e-15	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Lus10035994