PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10035854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NF-YB | ||||||||
Protein Properties | Length: 214aa MW: 22995.3 Da PI: 6.5842 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 173.5 | 2.2e-54 | 29 | 122 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdrflPianvsrimkk lPanakisk+ake+vqecvsefisfvt+easd+cqrekrktingddllwa++tlGf++yv plk+yl kyr++e+ Lus10035854 29 KEQDRFLPIANVSRIMKKSLPANAKISKEAKESVQECVSEFISFVTGEASDRCQREKRKTINGDDLLWAMTTLGFDNYVGPLKAYLGKYRDTEE 122 89*****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-50 | 25 | 124 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.04E-38 | 31 | 125 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.6E-27 | 34 | 98 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.3E-18 | 62 | 80 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 65 | 81 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.3E-18 | 81 | 99 | No hit | No description |
PRINTS | PR00615 | 1.3E-18 | 100 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAGKRYQQKG ISHTGSPTSS DGGSSSNNKE QDRFLPIANV SRIMKKSLPA NAKISKEAKE 60 SVQECVSEFI SFVTGEASDR CQREKRKTIN GDDLLWAMTT LGFDNYVGPL KAYLGKYRDT 120 EEGDTDDDVV VEGVFDDSTI NSTAFIGGAD HHHFYGEVGG PRLTHHLNSH NGGATSLVYT 180 LGVGGQYPPA VNGANGGMAS AAHHVHSDRI HQW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 4e-47 | 29 | 119 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 4e-47 | 29 | 119 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10035854 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075209.1 | 3e-63 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | Q75IZ7 | 3e-57 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A067KTU3 | 7e-62 | A0A067KTU3_JATCU; Uncharacterized protein | ||||
STRING | Lus10035854 | 1e-159 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-57 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Lus10035854 |
Publications ? help Back to Top | |||
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