PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035472
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family DBB
Protein Properties Length: 196aa    MW: 21369.8 Da    PI: 6.1416
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035472genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++lfC  ++  lC+ C ++ H
  Lus10035472  4 LCDVCESAAAILFCAADEAALCRACDEKVH 33
                 7**************************998 PP
2zf-B_box29.41.7e-095391337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                  ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Lus10035472 53 VPRCDICENAPAFFYCEVDGTSLCLQCDMVVHVGgkrtH 91
                 689**************************9996545555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.3E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000212.38E-6345No hitNo description
PfamPF006434.4E-6334IPR000315B-box-type zinc finger
SMARTSM003366.1E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501199.0155196IPR000315B-box-type zinc finger
PfamPF006435.3E-85391IPR000315B-box-type zinc finger
CDDcd000211.47E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHLCNKLAS RHVRVGLADP SAVPRCDICE  60
NAPAFFYCEV DGTSLCLQCD MVVHVGGKRT HGRYLLLRQR VEFPGDKPGQ VEDQNGTRRD  120
QRQQPDNAKR ENQQDHSVPP ILATENHSGA ANGVAENNLI DLNSRPQRIQ GEDSNNQQDD  180
HCSRCSVSKT PIAGS*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035472
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313009.12e-96B-box zinc finger protein 19 isoform X1
RefseqXP_024463705.12e-96B-box zinc finger protein 19 isoform X1
RefseqXP_024463706.12e-96B-box zinc finger protein 19 isoform X2
SwissprotC0SVM53e-76BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A3N7FND96e-95A0A3N7FND9_POPTR; Uncharacterized protein
STRINGLus100354721e-142(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-78DBB family protein