PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035460
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 681aa    MW: 74505.6 Da    PI: 7.1598
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035460genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-061201321426
                  --TTTTT-SS-SS CS
      zf-CCCH  14 tCkyGdrCkFaHg 26 
                   CkyGd+C+F+H+
  Lus10035460 120 SCKYGDKCRFSHD 132
                  8***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.188108134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4109134IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.136147172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.708.1E-71324567IPR013785Aldolase-type TIM barrel
CDDcd028017.37E-89328563No hitNo description
SuperFamilySSF513951.95E-61328641No hitNo description
PfamPF012075.1E-52331598IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360412430IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAESSVEHAT VVHDAPLPPA SNGGGAPKPA TPEELAAKGI APIKAEFLRP PPPARTTQSE  60
DAAPAATSES SNGATASASQ SGFVTKDKKS KRQLKRERLQ EQKSALHLCP VIAKSGDASS  120
CKYGDKCRFS HDLEGFKTQK PDDLDGVCPF LDEKARCPYG LACRFYSTHK HDVGVVGDGL  180
SVTNKNDSET NGLSKDIQRL LWKNKMKFPK ADAVLKALGL LGPAVKKTKD EQEANHQADK  240
KAGEVDGLGE KIEPNNIADN ARPLKKAKSD VDETCCSVEQ GSSVPEKESD ETVLDSLPEA  300
VSEVLHIETD ASLKTHPREK KLVDFSGKLY LAPLTTVGNL PFRRLCKVLG ADITCGEMAM  360
CTNLLQGQAS EWALLRRHSS EDLFGVQICG AYPDTVARTV ELIEQQCKVD FIDINMGCPI  420
EVVVSKGAGS CLLSKPMRMK NVIQASSSSV ETPITVKVRT AYFEGKNRID SLIADMGNWG  480
ASAVTIHGRT RQQRYSKLAD WDYISQCAKK APKLLQVLGN GDVFSSTDWN THKSNCPELA  540
SCMIGRGALV KPWIFTEIKE QRDWDISSGE RLDILKDYVK FGLQHWGSDT KGVETTRHFL  600
LEWLSYSCRY IPLGLLEIVP QHLNWRPPSY CGRDDLETLM ASESAADWIR ISEMLLGKVP  660
NGFTFAPKHK SNAYDRAENG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A6e-2632556327261tRNA-dihydrouridine synthase B
6ei9_B6e-2632556327261tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513011.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLB9RG590.0B9RG59_RICCO; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGLus100354600.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108891212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-06floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]