PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10035456

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

M-type_MADS

Protein Properties

Length: 248aa MW: 27316.8 Da PI: 6.6799

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10035456	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.2	5.7e-25	3	50	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rien+snr vtfskRr g++KKA+ELS+LC+aevav++fs+ ++++ + Lus10035456 3 RIENDSNRMVTFSKRRSGVFKKASELSTLCGAEVAVVVFSPGNRVFSF 50 8******************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.801	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-25	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-24	2	68	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-26	3	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-11	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-11	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MVRIENDSNR MVTFSKRRSG VFKKASELST LCGAEVAVVV FSPGNRVFSF GNPSVENIMN 60 LFYSGGRFSH HQSDMTAHII EANRKFEIDA LNIKLTQILE NNDKCKKRSE QLDNLLAVNL 120 NRRTIAETPM DELNQAQLFQ YRAGLETLKA GIHIQAQTRA QAFEEAQAYL AQNQPPVQPV 180 FINPAPLPPV TDLLQVAQPQ FAVNPATPGN YEFYQRFGNE NSDSVPAGDG NMMVNGPFGY 240 GHAGPSA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10035456

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10035456	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-35	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Lus10035456