PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035373
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 354aa    MW: 40205.5 Da    PI: 6.0896
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035373genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.59.2e-5261361129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lppGfrFhPtdeelv +yL++kv+g ++el ev++ vd+yk++Pw+Lp k  +  ++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++++ 
  Lus10035373   6 LPPGFRFHPTDEELVGYYLHRKVHGLEIEL-EVVPVVDLYKFDPWELPeKsFLPRRDMEWFFFCPRDRKYPNGSRTNRATRAGYWKATGKDRKIVCRs 102
                  79****************************.99**************95334455788*************************************987 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  +g  +g +ktLvfy+grap g + dWvmheyrle
  Lus10035373 103 SGGMTGYRKTLVFYRGRAPLGDRMDWVMHEYRLE 136
                  7888****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-584156IPR003441NAC domain
PROSITE profilePS5100558.7926156IPR003441NAC domain
PfamPF023659.5E-297135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLHRKVHG LEIELEVVPV VDLYKFDPWE LPEKSFLPRR  60
DMEWFFFCPR DRKYPNGSRT NRATRAGYWK ATGKDRKIVC RSSGGMTGYR KTLVFYRGRA  120
PLGDRMDWVM HEYRLEDDPY SSNSQGAYAL CRIVKRNEQA NKTGSRDASP SSSSMMTGDA  180
TARSRRASRK NGELVASTSI IFSEGLNLSD SLQSTPMSSP PRQVTGESDQ LVSVDTSDPS  240
NPWLLSPDLI LDTSKEYSRD QGSGFFPHYE STTTTMMPPW HQHGNNNEPF STSSTSYSNL  300
VMGDNIEHSL DHDHLSHIGS WNMSPYMDLW RNDEQPDMAS FYDDYDHMNN TNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-51516216171NO APICAL MERISTEM PROTEIN
1ut4_B4e-51516216171NO APICAL MERISTEM PROTEIN
1ut7_A4e-51516216171NO APICAL MERISTEM PROTEIN
1ut7_B4e-51516216171NO APICAL MERISTEM PROTEIN
3swm_A4e-51516219174NAC domain-containing protein 19
3swm_B4e-51516219174NAC domain-containing protein 19
3swm_C4e-51516219174NAC domain-containing protein 19
3swm_D4e-51516219174NAC domain-containing protein 19
3swp_A4e-51516219174NAC domain-containing protein 19
3swp_B4e-51516219174NAC domain-containing protein 19
3swp_C4e-51516219174NAC domain-containing protein 19
3swp_D4e-51516219174NAC domain-containing protein 19
4dul_A4e-51516216171NAC domain-containing protein 19
4dul_B4e-51516216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035373
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519841.11e-118NAC domain-containing protein 71
SwissprotO496971e-92NAC71_ARATH; NAC domain-containing protein 71
TrEMBLB9S1H61e-116B9S1H6_RICCO; Transcription factor, putative
STRINGLus100353730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-94NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]