PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035330
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 477aa    MW: 51609.4 Da    PI: 8.156
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035330genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37.1e-105884127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C +++r+G C yG +C+++H++
  Lus10035330 58 PGEPDCVYYLRNGVCGYGVNCRYNHPQ 84
                 5789*********************97 PP
2zf-CCCH37.15.4e-12105129327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C ++++tGtCkyG++Ck++H++
  Lus10035330 105 EPDCGYYLKTGTCKYGSTCKYHHPK 129
                  789********************96 PP
3zf-CCCH28.23.3e-09151174427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C++++rtG Ck+ + CkF+H++
  Lus10035330 151 KSCPYYMRTGACKFQGACKFHHPQ 174
                  56********************97 PP
4zf-CCCH38.32.3e-12301326227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+f+ tG+CkyG+ Ck++H++
  Lus10035330 301 DQPECRHFMNTGICKYGSDCKYHHPK 326
                  689*********************96 PP
5zf-CCCH34.34e-11347373127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC++++ +G+Ck+G++C++ H++
  Lus10035330 347 PGQALCSNYSTYGICKFGSNCRYDHPF 373
                  5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7465785IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-55784IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-75984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-56284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295102130IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5102129IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6107130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4108128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6146175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906147175IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025149174IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-7150174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.136299327IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5299326IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-10301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6302327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5305326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446346374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5346372IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-6346373IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8348373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4351371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MPDTNTNTRQ QTKNNNAGPN QSSDNIEEAI RRLKIHDDQE KGGGGGDVND SGPYPDRPGE  60
PDCVYYLRNG VCGYGVNCRY NHPQYAAQVT KGSQFKEELP ERVGEPDCGY YLKTGTCKYG  120
STCKYHHPKD RNGAGPVSYN LLGLPMRQDE KSCPYYMRTG ACKFQGACKF HHPQPASLEA  180
GVPLAGLSTY GSTGSSLIPT AGLPYVGGIP AWSMPRVPYM PAPRLETPQA FAPLYISPSQ  240
GIPPPAQGWN TYVGNVSPMS SPSILGSNLV FNSRNHDSAP SNGQIHLMSS SLTSNLPQRP  300
DQPECRHFMN TGICKYGSDC KYHHPKERTV HQLATNPAAP LGLPSRPGQA LCSNYSTYGI  360
CKFGSNCRYD HPFTGYPYSY SLTVPPLSVL DPSMVTYPPR MSEPPLTAPP TKVYYNNNGA  420
RNTKPQYQMN AGNNTKKTIA ATTTTTPPSD EATDTTADPS PPPHSSSKAS SEASHD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528968.10.0zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLB9SSJ90.0B9SSJ9_RICCO; Zinc finger protein, putative
STRINGLus100353300.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-110C3H family protein