PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10035286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 547aa MW: 55962.8 Da PI: 7.2983 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.3 | 2e-30 | 276 | 334 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+ Lus10035286 276 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTVLITTYEGTHNHP 334 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-33 | 260 | 336 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-28 | 268 | 336 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.539 | 270 | 336 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-36 | 275 | 335 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 277 | 334 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MARSSTRSGL SIDSPDLLTA PSTTTTTTLP SHTRSLPAAS TTTSSSCRFL FSVGQAPTVL 60 NSLPLMDSSS SPATEISAHP TTIQFVDDGG GADGGGGGGG GGGGACHLVH HRRKVIDEMD 120 FFAQRNNNNS DSVDLMSVDS DRRDGLELKV NTGLNLLTRN TSSEQSIVDD GGGTSSTNAD 180 DRRLKTELRG AADAETRDEA SAAAAVDGDS KKAIVEREES PDQGGGGAGG GGWAGGASNK 240 VARFNGSPNK SVDQTEATIR KARVSVRARS EAPMITDGCQ WRKYGQKMAK GNPCPRAYYR 300 CTMATGCPVR KQVQRCAEDR TVLITTYEGT HNHPLPPAAM AMASTTSSAA RMLLSGSMSS 360 TDGLMNSNFL TRTLLPCSSS MATISASAPF PTVTLDLTQT PNPLTGLQRP PPNHQIQLPF 420 PTTANQSPAA AAAALLPQLF GQALHNQSKF SGLQMSQDID HNAAAASLFS HAIQGGGSGG 480 GGGVGGQNQL ADTAAAIAAD PNFTAALVAA ISSIIGGGGG QPNGNGNNSN NNGSTSNGNG 540 VMKTRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 262 | 338 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10035286 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021893820.1 | 1e-141 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-103 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2N9G146 | 1e-150 | A0A2N9G146_FAGSY; Uncharacterized protein | ||||
STRING | Lus10035286 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 3e-82 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10035286 |