PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035248
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 438aa    MW: 47416.8 Da    PI: 8.7498
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035248genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-104771226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 + ++C +++rtG C yG+rC+++H+
  Lus10035248 47 GFPNCVYYMRTGVCGYGGRCRYNHP 71
                 6799********************9 PP
2zf-CCCH40.64.2e-1394117427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C+f+++tGtCk+G++CkF+H++
  Lus10035248  94 PPCQFYLKTGTCKFGASCKFNHPK 117
                  79********************96 PP
3zf-CCCH35.22e-11138163227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++ +C+++++tG Ck+G +CkF+H++
  Lus10035248 138 DEDECCYYLQTGRCKFGITCKFHHPQ 163
                  6789********************97 PP
4zf-CCCH33.47.9e-11281307127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C ++ +tG CkyG +C+++H++
  Lus10035248 281 PGEPECEYYIKTGDCKYGLSCRYHHPR 307
                  5799*********************96 PP
5zf-CCCH314.2e-10329352326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + +C+f+++tG+Ck+G +CkF H+
  Lus10035248 329 MQPCSFYLQTGHCKFGYKCKFDHP 352
                  579********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7274573IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-44572IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-74771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-64973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-45170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.10890118IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-790117IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-1094117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-694118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-595116IPR000571Zinc finger, CCCH-type
SMARTSM003560.0074136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319136164IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8138163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5138164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183280308IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4280307IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7282307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5284309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4286307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145326354IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6326353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6327353IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8329352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5330351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MESYGHNKAI DAPQLTEWSP AGAETGLEES MRGLRMSSNE AYPERPGFPN CVYYMRTGVC  60
GYGGRCRYNH PLDRAAAEAT VRATGLFPER NGDPPCQFYL KTGTCKFGAS CKFNHPKNRG  120
GSLINVTLNV QGYPLRPDED ECCYYLQTGR CKFGITCKFH HPQRADTTSA PQFYHPVQSP  180
SAAATNLRVR LPGTFMQGTY GPVLFSPGVV PIPGWSPYSA SVSPVQSPGA QTAVGPASQY  240
GVTQLAATTS GAPHRPYPSL LSFGALTSST QKEHNTFPER PGEPECEYYI KTGDCKYGLS  300
CRYHHPRDRV APITDSVLNP LGLPLRLGMQ PCSFYLQTGH CKFGYKCKFD HPVGGGVMRY  360
SPSASSLVDM PIAPYLVGSL LATLSPPSTS YELRPQLLSG LPPRKITYLS KSPPGPGHTS  420
NSPVGLILSQ TGPRSPY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035248
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608726.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-171C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2C9WP710.0A0A2C9WP71_MANES; Uncharacterized protein
STRINGLus100352480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-170C3H family protein