PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10035205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 28356.4 Da PI: 8.8814 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 97 | 118 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C++ ++++ +L Hi+ H Lus10035205 97 CSVCHRAYPTSRLLSLHISEaH 118 ******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 83 | 69 | 93 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 6.9 | 95 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 97 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 133 | 158 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 135 | 158 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAMMVVDIDP KSESGFPYWN PVRRRFSPES PFFESGNIER ELLAKQIALD LGEDQKQLLS 60 SMDEDAEVMF CPIAGCRAPL STMGFENHYI SQHTAACSVC HRAYPTSRLL SLHISEAHDS 120 FFKAKVARGY PMYECLVEGC GLKFKSYKSR QKHLVDKHKF PASYDFFKKG HHLSKKAREK 180 IHRNKTTTTT TRKNDEEGSS KMEADEEVEN LTSALSKMTT GSTPKSVSFG RASLFGLLLY 240 CCLVTVSKKS R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10035205 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070284.1 | 1e-103 | zinc finger protein 511 | ||||
TrEMBL | A0A067LCT1 | 1e-101 | A0A067LCT1_JATCU; Uncharacterized protein | ||||
STRING | Lus10035205 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9718 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 5e-91 | zinc ion binding;nucleic acid binding;zinc ion binding |
Link Out ? help Back to Top | |
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Phytozome | Lus10035205 |